miRNA display CGI


Results 81 - 100 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 23613 0.67 0.647928
Target:  5'- uCGcCGCCGcugccGGGGCGcGGCGgGGgUCg -3'
miRNA:   3'- uGCuGCGGU-----UCCUGCaCCGCgCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 23733 0.67 0.607882
Target:  5'- gGCcGCGCCGAGGcGCGUccgggaggGGCG-GGCUUg -3'
miRNA:   3'- -UGcUGCGGUUCC-UGCA--------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 24122 0.71 0.427684
Target:  5'- cCGAgGCgGGGGugGgggcugggugGGCGgGGCUCa -3'
miRNA:   3'- uGCUgCGgUUCCugCa---------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 25270 0.67 0.637915
Target:  5'- gGCGGcCGCCGuGGACa--GCGCGGCg- -3'
miRNA:   3'- -UGCU-GCGGUuCCUGcacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 26577 0.66 0.70747
Target:  5'- cGCGGCGCgGgAGGGCuGggaGGCGgCGGCg- -3'
miRNA:   3'- -UGCUGCGgU-UCCUG-Ca--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 27020 0.69 0.529022
Target:  5'- gGCGACuCgAAGGGCGUGGCGgccccacuCGGUUg -3'
miRNA:   3'- -UGCUGcGgUUCCUGCACCGC--------GCCGAg -5'
23579 5' -60.4 NC_005261.1 + 27243 0.67 0.617885
Target:  5'- -aGGCGCCuGGGGugG-GGCGgGGUg- -3'
miRNA:   3'- ugCUGCGG-UUCCugCaCCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 28113 0.67 0.616884
Target:  5'- uGCGucaGCGUCA-GGACG-GGCGCGccggggcGCUCg -3'
miRNA:   3'- -UGC---UGCGGUuCCUGCaCCGCGC-------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 28226 0.66 0.696665
Target:  5'- gGCGGCGCCGGcGGGCGUGuccacgacgaccuGCcGgGGCg- -3'
miRNA:   3'- -UGCUGCGGUU-CCUGCAC-------------CG-CgCCGag -5'
23579 5' -60.4 NC_005261.1 + 28771 0.7 0.472421
Target:  5'- -gGGCGCCuGGGcCGcGGCGCGggcGCUCg -3'
miRNA:   3'- ugCUGCGGuUCCuGCaCCGCGC---CGAG- -5'
23579 5' -60.4 NC_005261.1 + 29111 0.68 0.597896
Target:  5'- cCGACGCCGAGGGgagcCcUGGCGCcggggGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCU----GcACCGCG-----CCGag -5'
23579 5' -60.4 NC_005261.1 + 29284 0.67 0.647928
Target:  5'- uACG-CGCgCGAGGACGcGGCGUgcgugGGCg- -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCaCCGCG-----CCGag -5'
23579 5' -60.4 NC_005261.1 + 29439 0.67 0.65393
Target:  5'- gGCGcACGCUgccaacuggAAGGugcccauggcugcCGUGGCGCGGCg- -3'
miRNA:   3'- -UGC-UGCGG---------UUCCu------------GCACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 29577 0.7 0.454233
Target:  5'- cGCGACGCC-GGGGC-UGGCGgaGGCcuUCg -3'
miRNA:   3'- -UGCUGCGGuUCCUGcACCGCg-CCG--AG- -5'
23579 5' -60.4 NC_005261.1 + 29804 0.66 0.687778
Target:  5'- cCGGCGCCGGcGGCGcgGGCGCccgcgccgcGCUCg -3'
miRNA:   3'- uGCUGCGGUUcCUGCa-CCGCGc--------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 29808 0.68 0.58694
Target:  5'- -gGACGCgGuugccgugcacgcAGGcGCgGUGGCGCGGCUg -3'
miRNA:   3'- ugCUGCGgU-------------UCC-UG-CACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 29886 0.68 0.548457
Target:  5'- uGCGACGgCGGcGGcCcUGGCGCGGgUCg -3'
miRNA:   3'- -UGCUGCgGUU-CCuGcACCGCGCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 30008 0.66 0.687778
Target:  5'- cACGuGCGCCAugcuGGAgCGcgccgugcUGGCGCaGCUCu -3'
miRNA:   3'- -UGC-UGCGGUu---CCU-GC--------ACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 30279 0.67 0.647928
Target:  5'- cGCG-CGCCcgccuGGACGcUGGCccGCGcGCUCu -3'
miRNA:   3'- -UGCuGCGGuu---CCUGC-ACCG--CGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 30325 0.67 0.637915
Target:  5'- uCGugGCCGAGGcCGcGGCcGCGGaCa- -3'
miRNA:   3'- uGCugCGGUUCCuGCaCCG-CGCC-Gag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.