miRNA display CGI


Results 101 - 120 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 30469 0.71 0.418181
Target:  5'- uGCG-CGCCAgcgagcgcuGGGGCGUGGCcccccccGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCACCG-------CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 31005 0.7 0.454233
Target:  5'- cCGGgGCCAGGGGCccGGCGcCGGC-Ca -3'
miRNA:   3'- uGCUgCGGUUCCUGcaCCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 31108 0.73 0.324094
Target:  5'- -gGGCGCCGucgccGGcGCgGUGGCGCGGCUg -3'
miRNA:   3'- ugCUGCGGUu----CC-UG-CACCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 31189 0.75 0.251975
Target:  5'- gGCGGCcuacugccGCCccGAGGuCGcGGCGCGGCUCg -3'
miRNA:   3'- -UGCUG--------CGG--UUCCuGCaCCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 31203 0.67 0.647928
Target:  5'- cGCGugGCgCGcccugcuccuuGGGcACGUGGCGCucGGCg- -3'
miRNA:   3'- -UGCugCG-GU-----------UCC-UGCACCGCG--CCGag -5'
23579 5' -60.4 NC_005261.1 + 31384 0.73 0.296213
Target:  5'- -gGACcCCGAGGACGUGcGCGUGGUg- -3'
miRNA:   3'- ugCUGcGGUUCCUGCAC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 31441 0.69 0.528057
Target:  5'- gGCGGCGCCGcccggcgAGGACGa-GCGcCGGCg- -3'
miRNA:   3'- -UGCUGCGGU-------UCCUGCacCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 31533 0.66 0.70747
Target:  5'- uGCaGCGCU-GGGACGcgaucGGCGCGGCccUCg -3'
miRNA:   3'- -UGcUGCGGuUCCUGCa----CCGCGCCG--AG- -5'
23579 5' -60.4 NC_005261.1 + 31580 0.7 0.445283
Target:  5'- gGCG-CGCC--GGACGUGaGCGC-GCUCg -3'
miRNA:   3'- -UGCuGCGGuuCCUGCAC-CGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 31598 0.74 0.264031
Target:  5'- gACGuCGCCGAGcuCGUcGCGCGGCUCc -3'
miRNA:   3'- -UGCuGCGGUUCcuGCAcCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 31625 0.67 0.631905
Target:  5'- cGCGGCGUCuGGGACGagGuccaggaggagcgccGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGuUCCUGCa-C---------------CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 31627 0.67 0.617885
Target:  5'- cGCGACGC--GGGACcUGGCcuuccGCGGCg- -3'
miRNA:   3'- -UGCUGCGguUCCUGcACCG-----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 31701 0.68 0.578004
Target:  5'- cCGcCGCCGAGGAgGcGGUGCuGGCg- -3'
miRNA:   3'- uGCuGCGGUUCCUgCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 31793 0.75 0.234746
Target:  5'- gACGugGCCGAcugggcGGGCGUGGacCGCGGCcCg -3'
miRNA:   3'- -UGCugCGGUU------CCUGCACC--GCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 31885 0.75 0.218516
Target:  5'- cGCGcGCGCCGAGGcCGcuuacGCGCGGCUCu -3'
miRNA:   3'- -UGC-UGCGGUUCCuGCac---CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 31885 0.75 0.243808
Target:  5'- cGCGGCGgCGGGGGCGgacgcggcggcggGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa------------CC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 31980 0.66 0.70747
Target:  5'- aGCGGCGgCGGcGGccCGguagGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCgGUU-CCu-GCa---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 32184 0.71 0.385552
Target:  5'- cGCGGCGCUAGGGcCGggcaGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGUUCCuGCac--CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 32277 0.71 0.431171
Target:  5'- -gGGCGCCGAGGccaucgACGgcgcgcucgcggagGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGUUCC------UGCa-------------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 32328 0.66 0.667908
Target:  5'- cGCGGCGCCc--GGCGUGGCcUGGgaCg -3'
miRNA:   3'- -UGCUGCGGuucCUGCACCGcGCCgaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.