miRNA display CGI


Results 121 - 140 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 32372 0.67 0.607882
Target:  5'- -aGACGCUGgugcAGG-CGcGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGU----UCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 32556 0.68 0.558259
Target:  5'- -gGGCGCCAuGGGCGUGG-GCGuCUUc -3'
miRNA:   3'- ugCUGCGGUuCCUGCACCgCGCcGAG- -5'
23579 5' -60.4 NC_005261.1 + 32911 0.68 0.578004
Target:  5'- gGCGGCGCC-GGGGCG-GaGUGCGagaccccgcGCUCg -3'
miRNA:   3'- -UGCUGCGGuUCCUGCaC-CGCGC---------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 33063 0.82 0.081725
Target:  5'- uCGGCGCCGGGGACGcGGCGCuGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCUGCaCCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 33376 0.67 0.617885
Target:  5'- uCGACGCguGcgugacccgcgcGGuccGCGUGGCGCGGCc- -3'
miRNA:   3'- uGCUGCGguU------------CC---UGCACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 33589 0.67 0.607882
Target:  5'- cGCGAgCaCCAGGGGCGgcgccGGCGCgGGCg- -3'
miRNA:   3'- -UGCU-GcGGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 33747 0.71 0.393757
Target:  5'- cGCGGCGCCGGGGccgggcccgcucGCGgGGCccGCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUCC------------UGCaCCG--CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 33747 0.68 0.577012
Target:  5'- cACGACGCCGuGGACGagcuggagGGCGagguggaCGGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCUGCa-------CCGC-------GCCGag -5'
23579 5' -60.4 NC_005261.1 + 33822 0.67 0.606883
Target:  5'- uGCGGCGCCGuuucGGCGcgcuuuaUGGCGCGcCUCu -3'
miRNA:   3'- -UGCUGCGGUuc--CUGC-------ACCGCGCcGAG- -5'
23579 5' -60.4 NC_005261.1 + 34069 0.71 0.41904
Target:  5'- cGCGGCGCCcgcGGAC--GGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGuu-CCUGcaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 34357 0.66 0.667908
Target:  5'- gACGGgGCC--GGGCGccGCGCGGCg- -3'
miRNA:   3'- -UGCUgCGGuuCCUGCacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 34648 0.71 0.41904
Target:  5'- cACGGCGgCGAGcGACGgcgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCUGCgGUUC-CUGCa----CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 34768 0.73 0.303004
Target:  5'- -gGACGCCcuGGcGACG-GGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGu-UC-CUGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 34908 0.74 0.276551
Target:  5'- -gGACGCgGAGGuCGgGGCGCGGC-Ca -3'
miRNA:   3'- ugCUGCGgUUCCuGCaCCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 35125 0.73 0.331362
Target:  5'- cUGGCGCCGGGGGCGcUGGC-CgGGCUg -3'
miRNA:   3'- uGCUGCGGUUCCUGC-ACCGcG-CCGAg -5'
23579 5' -60.4 NC_005261.1 + 35330 0.67 0.617885
Target:  5'- -aGGCGCUgcGGGCcaggGGCGCggGGCUCc -3'
miRNA:   3'- ugCUGCGGuuCCUGca--CCGCG--CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 35379 0.69 0.538709
Target:  5'- -gGACGCgCugcuGGcccagcACGUGGCGCGGCg- -3'
miRNA:   3'- ugCUGCG-Guu--CC------UGCACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 35547 0.68 0.578004
Target:  5'- aGCGACgGCCGcggcGGACGcGGCGCugGGCg- -3'
miRNA:   3'- -UGCUG-CGGUu---CCUGCaCCGCG--CCGag -5'
23579 5' -60.4 NC_005261.1 + 35627 0.69 0.529022
Target:  5'- cUGGCGgCGAGGACGcggaaGGCGCgGGCg- -3'
miRNA:   3'- uGCUGCgGUUCCUGCa----CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 35724 0.68 0.597896
Target:  5'- cGCGGaccUGCgCAAGGcccagGCGcUGGCGCGGCg- -3'
miRNA:   3'- -UGCU---GCG-GUUCC-----UGC-ACCGCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.