miRNA display CGI


Results 41 - 60 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 130438 0.68 0.587935
Target:  5'- cGCGGCGCCuacguGGucuccuACGacUGGCccgaGCGGCUCg -3'
miRNA:   3'- -UGCUGCGGuu---CC------UGC--ACCG----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 130321 0.67 0.637915
Target:  5'- uGCaGCGCCAuGGACGgcccGGC-CGcGCUCg -3'
miRNA:   3'- -UGcUGCGGUuCCUGCa---CCGcGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 129659 0.69 0.509847
Target:  5'- gGCGGCGgCAGGGGCGggaccgggGGCGuCGcGaCUCg -3'
miRNA:   3'- -UGCUGCgGUUCCUGCa-------CCGC-GC-C-GAG- -5'
23579 5' -60.4 NC_005261.1 + 128796 0.71 0.41904
Target:  5'- -gGGCGCCcGGGccCGcGGCGgGGCUCg -3'
miRNA:   3'- ugCUGCGGuUCCu-GCaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 128640 0.71 0.427684
Target:  5'- cCGAgGCgGGGGugGgggcugggugGGCGgGGCUCa -3'
miRNA:   3'- uGCUgCGgUUCCugCa---------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 128250 0.67 0.607882
Target:  5'- gGCcGCGCCGAGGcGCGUccgggaggGGCG-GGCUUg -3'
miRNA:   3'- -UGcUGCGGUUCC-UGCA--------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 128130 0.67 0.647928
Target:  5'- uCGcCGCCGcugccGGGGCGcGGCGgGGgUCg -3'
miRNA:   3'- uGCuGCGGU-----UCCUGCaCCGCgCCgAG- -5'
23579 5' -60.4 NC_005261.1 + 128064 0.67 0.656929
Target:  5'- gGCGGCaggaGCCGucgcagguggggcAGGGC-UGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU-------------UCCUGcACC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 127861 0.68 0.578004
Target:  5'- cGCGGCGCCAGGGcacgaGCGggagucGCGcCGGCg- -3'
miRNA:   3'- -UGCUGCGGUUCC-----UGCac----CGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 127700 0.69 0.500368
Target:  5'- gGCGGCGCCgGAGGAgcUGcGCGUGGCc- -3'
miRNA:   3'- -UGCUGCGG-UUCCUgcAC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 127646 0.7 0.472421
Target:  5'- gGCGGCGCCGGGGggcgcGCGgguucGGgGCGGgaCg -3'
miRNA:   3'- -UGCUGCGGUUCC-----UGCa----CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 127485 0.69 0.500368
Target:  5'- gACGAgGCCGAGGAcCGggaGGagGCGGCg- -3'
miRNA:   3'- -UGCUgCGGUUCCU-GCa--CCg-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 127365 0.69 0.538709
Target:  5'- cGCGugGCU-AGGAUGUcguuGGCGgCGGCg- -3'
miRNA:   3'- -UGCugCGGuUCCUGCA----CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 127252 0.67 0.607882
Target:  5'- --aGCGCCAGucGGGCGcGGgGCGGCg- -3'
miRNA:   3'- ugcUGCGGUU--CCUGCaCCgCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 127188 0.71 0.41904
Target:  5'- gGCGGCGCCcgagugccgccgGGGGACG-GGCcCGGCg- -3'
miRNA:   3'- -UGCUGCGG------------UUCCUGCaCCGcGCCGag -5'
23579 5' -60.4 NC_005261.1 + 127087 0.67 0.647928
Target:  5'- cGCGcCGCCGcaauGACGgcugGGCGCGGUg- -3'
miRNA:   3'- -UGCuGCGGUuc--CUGCa---CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 126939 0.71 0.410503
Target:  5'- aGCG-CgGCCAGGGGCGccgGGCGCGGg-- -3'
miRNA:   3'- -UGCuG-CGGUUCCUGCa--CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 126573 0.69 0.500368
Target:  5'- gGCGGgGuUCAGGGGCuccGGCGgGGCUCg -3'
miRNA:   3'- -UGCUgC-GGUUCCUGca-CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 125880 0.71 0.384738
Target:  5'- gGCGGCGCCcuuggcugAAGGcGCcugagccagauguGUGGCGgGGCUCg -3'
miRNA:   3'- -UGCUGCGG--------UUCC-UG-------------CACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 125604 0.7 0.445283
Target:  5'- gACcGCGCCGGacuacaccguGGugGcGGCGCGGCUg -3'
miRNA:   3'- -UGcUGCGGUU----------CCugCaCCGCGCCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.