miRNA display CGI


Results 61 - 80 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 124166 0.66 0.667908
Target:  5'- gACGugGCCcuGGACGcGGCcugccuGCGgaccGCUCg -3'
miRNA:   3'- -UGCugCGGuuCCUGCaCCG------CGC----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 122967 0.71 0.427684
Target:  5'- gGCGGCGCCGccGGGGCGau-CGCGGCcCa -3'
miRNA:   3'- -UGCUGCGGU--UCCUGCaccGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 122922 0.68 0.548457
Target:  5'- aGCGcACGCCGAGcaGCGcGGcCGCGcGCUCa -3'
miRNA:   3'- -UGC-UGCGGUUCc-UGCaCC-GCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 122856 0.72 0.33875
Target:  5'- gGCGGCGCCGAGGGCGccGaGCGCcGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCCUGCa-C-CGCGcCGaG- -5'
23579 5' -60.4 NC_005261.1 + 122312 0.69 0.529022
Target:  5'- gGCGACGCCcGGGccggcggucAgGUGGCGCucgcagaGCUCg -3'
miRNA:   3'- -UGCUGCGGuUCC---------UgCACCGCGc------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 121507 0.7 0.472421
Target:  5'- cGCGGCucGCCGAGGGCcaGUaccGGCGCGcGCUg -3'
miRNA:   3'- -UGCUG--CGGUUCCUG--CA---CCGCGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 121124 0.67 0.607882
Target:  5'- -gGGCGCgGAGGcGCG-GGCGCGaGCg- -3'
miRNA:   3'- ugCUGCGgUUCC-UGCaCCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 120931 0.67 0.647928
Target:  5'- cGCGAgCGCCGGGcGCGggaaGGUGgaGGCUCg -3'
miRNA:   3'- -UGCU-GCGGUUCcUGCa---CCGCg-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 120088 0.68 0.578004
Target:  5'- -gGACGCCAucGGCGacugGGCcuGCGGCUg -3'
miRNA:   3'- ugCUGCGGUucCUGCa---CCG--CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 119991 0.66 0.677861
Target:  5'- cCGACGCUgGAGGGCGccGGCuacGCGGC-Cg -3'
miRNA:   3'- uGCUGCGG-UUCCUGCa-CCG---CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 119480 0.66 0.687778
Target:  5'- -aGACGCCcuuGGGGACGccGGCGCcGC-Cg -3'
miRNA:   3'- ugCUGCGG---UUCCUGCa-CCGCGcCGaG- -5'
23579 5' -60.4 NC_005261.1 + 119220 0.66 0.677861
Target:  5'- cAUGGCccuGCCGGGGcgaGCGUGGCcgaucGCGGC-Ca -3'
miRNA:   3'- -UGCUG---CGGUUCC---UGCACCG-----CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 118921 0.73 0.309915
Target:  5'- cCGGCGCCGcGGGCGcGGCgccgcGCGGCUg -3'
miRNA:   3'- uGCUGCGGUuCCUGCaCCG-----CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 118918 0.67 0.607882
Target:  5'- uACGACuGCCGcacGGACGUGuggaGCGCGGgCgUCg -3'
miRNA:   3'- -UGCUG-CGGUu--CCUGCAC----CGCGCC-G-AG- -5'
23579 5' -60.4 NC_005261.1 + 118847 0.7 0.481651
Target:  5'- uGCGGCGCgGAGGGCGgcgcgccCGCGGCc- -3'
miRNA:   3'- -UGCUGCGgUUCCUGCacc----GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 118801 0.71 0.393757
Target:  5'- gAUGGCGCaCGuGGGCGUcugcgcccugGGCGCGGCa- -3'
miRNA:   3'- -UGCUGCG-GUuCCUGCA----------CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 118801 0.68 0.558259
Target:  5'- gACGACguguGCCu-GGGCGacuucGGCGCGGCa- -3'
miRNA:   3'- -UGCUG----CGGuuCCUGCa----CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 118669 0.72 0.377461
Target:  5'- uCGGgGCUGAGGGCGgcgGGCGCuGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCUGCa--CCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 118548 0.68 0.577012
Target:  5'- uGCGGCGCgcgCGAGGAcgcCGUGcccgcgcGCGCGGCg- -3'
miRNA:   3'- -UGCUGCG---GUUCCU---GCAC-------CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 118493 0.74 0.276551
Target:  5'- uGCGGCGCUgcGGACccUGGCGCcGCUCg -3'
miRNA:   3'- -UGCUGCGGuuCCUGc-ACCGCGcCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.