miRNA display CGI


Results 81 - 100 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 118385 0.7 0.454233
Target:  5'- cGCGAggaaGCCGAGGACGccGcGCGCGcGCUg -3'
miRNA:   3'- -UGCUg---CGGUUCCUGCa-C-CGCGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 117890 0.77 0.179876
Target:  5'- cGCGGCaGCCGcGGGCGUcgcucGuGCGCGGCUCg -3'
miRNA:   3'- -UGCUG-CGGUuCCUGCA-----C-CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 117169 0.75 0.251975
Target:  5'- gGCGGuCGCCAAGGACcccGGCGgGGCg- -3'
miRNA:   3'- -UGCU-GCGGUUCCUGca-CCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 116478 0.67 0.647928
Target:  5'- cCGGCGCgGgcGGGGCGgGcGCGCGGUa- -3'
miRNA:   3'- uGCUGCGgU--UCCUGCaC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 115990 0.69 0.509847
Target:  5'- -gGGCGCgGAGgGGCGgggcgggGGUGCcGGCUCg -3'
miRNA:   3'- ugCUGCGgUUC-CUGCa------CCGCG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 115586 0.66 0.667908
Target:  5'- gGCGcCGCCAgcgcgucuaGGGACGggacGGgGCGGgaCg -3'
miRNA:   3'- -UGCuGCGGU---------UCCUGCa---CCgCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 115418 0.69 0.538709
Target:  5'- gGCGGCaGCCGGGGcCGcGGCcCGaGCUCg -3'
miRNA:   3'- -UGCUG-CGGUUCCuGCaCCGcGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 114049 1.09 0.00098
Target:  5'- gACGACGCCAAGGACGUGGCGCGGCUCa -3'
miRNA:   3'- -UGCUGCGGUUCCUGCACCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 113910 0.76 0.188928
Target:  5'- cGCGAUgGCCGAGGcaGCG-GGCGCGGCg- -3'
miRNA:   3'- -UGCUG-CGGUUCC--UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 113278 0.67 0.647928
Target:  5'- gACGGCuaCGAGGGCGUGGUccucucgcugccGCGGg-- -3'
miRNA:   3'- -UGCUGcgGUUCCUGCACCG------------CGCCgag -5'
23579 5' -60.4 NC_005261.1 + 113036 0.67 0.627899
Target:  5'- aGCGG-GCCGcgcGcGGCGUGGCGCGccaccGCUCg -3'
miRNA:   3'- -UGCUgCGGUu--C-CUGCACCGCGC-----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 112918 0.69 0.529022
Target:  5'- uGCG-UGCgCGAGGGCGagGGCGgCGcGCUCg -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCa-CCGC-GC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 112454 0.66 0.687778
Target:  5'- uGCGACGUgcGGGcCGUGcuaaacauGCGCGGCa- -3'
miRNA:   3'- -UGCUGCGguUCCuGCAC--------CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 112153 0.69 0.516526
Target:  5'- cGCGACGCCGAucaugcucuucgccGGcCGcGcGCGgGGCUCg -3'
miRNA:   3'- -UGCUGCGGUU--------------CCuGCaC-CGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 111589 0.72 0.361625
Target:  5'- uCGAgGCCGAGcacGCGgagugGGCGCGGCUg -3'
miRNA:   3'- uGCUgCGGUUCc--UGCa----CCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 110226 0.74 0.264031
Target:  5'- gGCGACGCCuccAGcGugGgcGGCGCGGCg- -3'
miRNA:   3'- -UGCUGCGGu--UC-CugCa-CCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 110003 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 109875 0.66 0.717229
Target:  5'- aGCGGgGCCcgcGGGCG-GGCGCcccggGGCUa -3'
miRNA:   3'- -UGCUgCGGuu-CCUGCaCCGCG-----CCGAg -5'
23579 5' -60.4 NC_005261.1 + 109747 0.68 0.578004
Target:  5'- gAUGAgGUCGuacAGGucgaGCGUGGC-CGGCUCg -3'
miRNA:   3'- -UGCUgCGGU---UCC----UGCACCGcGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 109187 0.68 0.572062
Target:  5'- aGCaGCGCCGcgucGGGCGUgcgcaggcgcucguaGGCGCGGCa- -3'
miRNA:   3'- -UGcUGCGGUu---CCUGCA---------------CCGCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.