miRNA display CGI


Results 101 - 120 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 108744 0.66 0.70747
Target:  5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5'
23579 5' -60.4 NC_005261.1 + 108369 0.66 0.69765
Target:  5'- aGCGGCGCC---GGCGccGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuucCUGCacCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 108167 0.76 0.188928
Target:  5'- cGCGucCGCCAGGGcGCGcGGcCGCGGCUCc -3'
miRNA:   3'- -UGCu-GCGGUUCC-UGCaCC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 108060 0.7 0.481651
Target:  5'- uCGGCGCgCAGcGcGGCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUGCG-GUU-C-CUGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 106186 0.66 0.677861
Target:  5'- -gGGCGCCGcGcGCGUGGCGCcGUUUa -3'
miRNA:   3'- ugCUGCGGUuCcUGCACCGCGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 105968 0.7 0.472421
Target:  5'- gGCGGCGCCucGG-CGUGcggcuccagcaGCGCGGC-Cg -3'
miRNA:   3'- -UGCUGCGGuuCCuGCAC-----------CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 105916 0.66 0.69765
Target:  5'- -gGGCGCCGcGGcCGcGGCGgCGGCg- -3'
miRNA:   3'- ugCUGCGGUuCCuGCaCCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 105798 0.68 0.578004
Target:  5'- cCGGCGCCcAGGcc--GGCGgGGCUCc -3'
miRNA:   3'- uGCUGCGGuUCCugcaCCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 105707 0.74 0.257946
Target:  5'- cCGGgGCCGGGGcCG-GGCGCGGCg- -3'
miRNA:   3'- uGCUgCGGUUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 105580 0.69 0.529988
Target:  5'- aGCGGCGCgGGGGGCuggccccgcuccagGGCGagccCGGCUCg -3'
miRNA:   3'- -UGCUGCGgUUCCUGca------------CCGC----GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 105540 0.67 0.657928
Target:  5'- gGCGGgugggcuuuUGCgGAGGGCGgcgGGCGgCGGCg- -3'
miRNA:   3'- -UGCU---------GCGgUUCCUGCa--CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 105140 0.77 0.167019
Target:  5'- cCGACGCaGGGGAUGUGGCGgCGGC-Cg -3'
miRNA:   3'- uGCUGCGgUUCCUGCACCGC-GCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 105040 0.68 0.56811
Target:  5'- -gGGCGCgGGcGGGCGgggGGCagggcggacgGCGGCUCg -3'
miRNA:   3'- ugCUGCGgUU-CCUGCa--CCG----------CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 104980 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 104777 0.69 0.529022
Target:  5'- gGCGGCGgCugcGGGGCGgcugcGGCGgCGGCUg -3'
miRNA:   3'- -UGCUGCgGu--UCCUGCa----CCGC-GCCGAg -5'
23579 5' -60.4 NC_005261.1 + 104659 0.67 0.627899
Target:  5'- aACG-CGCUGGcGGGCGUGuGCuGCGGCa- -3'
miRNA:   3'- -UGCuGCGGUU-CCUGCAC-CG-CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 104590 0.7 0.472421
Target:  5'- gGCG-CGCgCGGGGGCGgGGUGCGGggCg -3'
miRNA:   3'- -UGCuGCG-GUUCCUGCaCCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 103915 0.72 0.361625
Target:  5'- cGCGcCGCC-AGGuCG-GGCGCGGCg- -3'
miRNA:   3'- -UGCuGCGGuUCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 103505 0.7 0.445283
Target:  5'- uCGGCGCCGcGGACGgcGGCguccGCGGCa- -3'
miRNA:   3'- uGCUGCGGUuCCUGCa-CCG----CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 103150 0.73 0.303004
Target:  5'- cGCGGCuCCGAGGGCGagggGGCGCGGa-- -3'
miRNA:   3'- -UGCUGcGGUUCCUGCa---CCGCGCCgag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.