Results 61 - 80 of 544 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 36246 | 0.74 | 0.264031 |
Target: 5'- uACGACGCCGugacguaccuggAGGGCGaccUGGCGgccgugcccCGGCUCg -3' miRNA: 3'- -UGCUGCGGU------------UCCUGC---ACCGC---------GCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31598 | 0.74 | 0.264031 |
Target: 5'- gACGuCGCCGAGcuCGUcGCGCGGCUCc -3' miRNA: 3'- -UGCuGCGGUUCcuGCAcCGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 90303 | 0.73 | 0.309915 |
Target: 5'- cGCGGCGCgcGGGACGUGacggccGCGCGGUUg -3' miRNA: 3'- -UGCUGCGguUCCUGCAC------CGCGCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 75541 | 0.73 | 0.321937 |
Target: 5'- cACGcuGCGCCGGcgcgugcagcuggcGGACGUGGCGCuGGcCUCc -3' miRNA: 3'- -UGC--UGCGGUU--------------CCUGCACCGCG-CC-GAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 65190 | 0.73 | 0.324094 |
Target: 5'- -aGGCGCgGGGGgcGCGUGGCGCgacGGCUg -3' miRNA: 3'- ugCUGCGgUUCC--UGCACCGCG---CCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 31108 | 0.73 | 0.324094 |
Target: 5'- -gGGCGCCGucgccGGcGCgGUGGCGCGGCUg -3' miRNA: 3'- ugCUGCGGUu----CC-UG-CACCGCGCCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 67000 | 0.73 | 0.324094 |
Target: 5'- uGCGcCGCCGAGGgccGCGUGcGCGCGcGCa- -3' miRNA: 3'- -UGCuGCGGUUCC---UGCAC-CGCGC-CGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 35125 | 0.73 | 0.331362 |
Target: 5'- cUGGCGCCGGGGGCGcUGGC-CgGGCUg -3' miRNA: 3'- uGCUGCGGUUCCUGC-ACCGcG-CCGAg -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 122856 | 0.72 | 0.33875 |
Target: 5'- gGCGGCGCCGAGGGCGccGaGCGCcGC-Cg -3' miRNA: 3'- -UGCUGCGGUUCCUGCa-C-CGCGcCGaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 71837 | 0.72 | 0.341739 |
Target: 5'- gACGACGCCuucuuccugaaaagaGcgagGGGGCGccggGGCGCGaGCUCg -3' miRNA: 3'- -UGCUGCGG---------------U----UCCUGCa---CCGCGC-CGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 55770 | 0.73 | 0.309915 |
Target: 5'- gACGGgGCCGGGGGCGgcaacggcGGCGCGGggCc -3' miRNA: 3'- -UGCUgCGGUUCCUGCa-------CCGCGCCgaG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 103150 | 0.73 | 0.303004 |
Target: 5'- cGCGGCuCCGAGGGCGagggGGCGCGGa-- -3' miRNA: 3'- -UGCUGcGGUUCCUGCa---CCGCGCCgag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 61187 | 0.74 | 0.270233 |
Target: 5'- cGCGGuCGCCGAGGGcCGcGcGCGCGGcCUCg -3' miRNA: 3'- -UGCU-GCGGUUCCU-GCaC-CGCGCC-GAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 65532 | 0.74 | 0.276551 |
Target: 5'- cGCGACGCUGGcGGACcUGGCGCgccGGUUCg -3' miRNA: 3'- -UGCUGCGGUU-CCUGcACCGCG---CCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 88261 | 0.74 | 0.287562 |
Target: 5'- gGCGGCGCCGGGGAUGacgacggcGccgccuccuuuuuuGCGCGGCUCc -3' miRNA: 3'- -UGCUGCGGUUCCUGCa-------C--------------CGCGCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 135901 | 0.73 | 0.296213 |
Target: 5'- -gGACcCCGAGGACGUGcGCGUGGUg- -3' miRNA: 3'- ugCUGcGGUUCCUGCAC-CGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 6424 | 0.73 | 0.296213 |
Target: 5'- gGCGgcGCGCCGucAGGcGCGgcgGGCGCGGCgUCg -3' miRNA: 3'- -UGC--UGCGGU--UCC-UGCa--CCGCGCCG-AG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 34768 | 0.73 | 0.303004 |
Target: 5'- -gGACGCCcuGGcGACG-GGCGCGGCg- -3' miRNA: 3'- ugCUGCGGu-UC-CUGCaCCGCGCCGag -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 43198 | 0.73 | 0.303004 |
Target: 5'- uGCGGCGCCGAGcGcCGccGGCGgCGGCUUu -3' miRNA: 3'- -UGCUGCGGUUC-CuGCa-CCGC-GCCGAG- -5' |
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23579 | 5' | -60.4 | NC_005261.1 | + | 11756 | 0.73 | 0.303004 |
Target: 5'- gGCGGCGCgguacuaccgCGAGGcgagcGCGcUGGCGCGGCUg -3' miRNA: 3'- -UGCUGCG----------GUUCC-----UGC-ACCGCGCCGAg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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