Results 101 - 120 of 544 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 103113 | 0.71 | 0.410503 |
Target: 5'- uGCGACGCCGccGGCGgcUGGgG-GGCUCg -3' miRNA: 3'- -UGCUGCGGUucCUGC--ACCgCgCCGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 45174 | 0.71 | 0.413905 |
Target: 5'- cGCGugGCCAgcgagaacagcuucgAGGgccGCGUGuGCGCgGGCUUg -3' miRNA: 3'- -UGCugCGGU---------------UCC---UGCAC-CGCG-CCGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 30469 | 0.71 | 0.418181 |
Target: 5'- uGCG-CGCCAgcgagcgcuGGGGCGUGGCcccccccGCGGC-Cg -3' miRNA: 3'- -UGCuGCGGU---------UCCUGCACCG-------CGCCGaG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 10652 | 0.71 | 0.41904 |
Target: 5'- -aGACGCCcAGGGCGcccUGGUGCGGg-- -3' miRNA: 3'- ugCUGCGGuUCCUGC---ACCGCGCCgag -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 99517 | 0.71 | 0.41904 |
Target: 5'- -gGGCGCUggGGGCGcgggccUGGC-CGGCUUg -3' miRNA: 3'- ugCUGCGGuuCCUGC------ACCGcGCCGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 32184 | 0.71 | 0.385552 |
Target: 5'- cGCGGCGCUAGGGcCGggcaGCGCGGUg- -3' miRNA: 3'- -UGCUGCGGUUCCuGCac--CGCGCCGag -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 22058 | 0.72 | 0.376658 |
Target: 5'- aGCGGCGUCGGGGACGcGGCcgcgaccGCGcGCUg -3' miRNA: 3'- -UGCUGCGGUUCCUGCaCCG-------CGC-CGAg -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 90303 | 0.73 | 0.309915 |
Target: 5'- cGCGGCGCgcGGGACGUGacggccGCGCGGUUg -3' miRNA: 3'- -UGCUGCGguUCCUGCAC------CGCGCCGAg -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 75541 | 0.73 | 0.321937 |
Target: 5'- cACGcuGCGCCGGcgcgugcagcuggcGGACGUGGCGCuGGcCUCc -3' miRNA: 3'- -UGC--UGCGGUU--------------CCUGCACCGCG-CC-GAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 65190 | 0.73 | 0.324094 |
Target: 5'- -aGGCGCgGGGGgcGCGUGGCGCgacGGCUg -3' miRNA: 3'- ugCUGCGgUUCC--UGCACCGCG---CCGAg -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 31108 | 0.73 | 0.324094 |
Target: 5'- -gGGCGCCGucgccGGcGCgGUGGCGCGGCUg -3' miRNA: 3'- ugCUGCGGUu----CC-UG-CACCGCGCCGAg -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 67000 | 0.73 | 0.324094 |
Target: 5'- uGCGcCGCCGAGGgccGCGUGcGCGCGcGCa- -3' miRNA: 3'- -UGCuGCGGUUCC---UGCAC-CGCGC-CGag -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 35125 | 0.73 | 0.331362 |
Target: 5'- cUGGCGCCGGGGGCGcUGGC-CgGGCUg -3' miRNA: 3'- uGCUGCGGUUCCUGC-ACCGcG-CCGAg -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 122856 | 0.72 | 0.33875 |
Target: 5'- gGCGGCGCCGAGGGCGccGaGCGCcGC-Cg -3' miRNA: 3'- -UGCUGCGGUUCCUGCa-C-CGCGcCGaG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 71837 | 0.72 | 0.341739 |
Target: 5'- gACGACGCCuucuuccugaaaagaGcgagGGGGCGccggGGCGCGaGCUCg -3' miRNA: 3'- -UGCUGCGG---------------U----UCCUGCa---CCGCGC-CGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 62920 | 0.72 | 0.346257 |
Target: 5'- cGCG-CGCCGccGACgGUGGCGCGGUg- -3' miRNA: 3'- -UGCuGCGGUucCUG-CACCGCGCCGag -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 79869 | 0.72 | 0.346257 |
Target: 5'- gACGuCGCCGcacaccuGGACuGgccGGCGCGGCUCc -3' miRNA: 3'- -UGCuGCGGUu------CCUG-Ca--CCGCGCCGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 55199 | 0.72 | 0.353882 |
Target: 5'- cGCGGCGagcggcccucCCGGGGGCGccGGCgacgGCGGCUCg -3' miRNA: 3'- -UGCUGC----------GGUUCCUGCa-CCG----CGCCGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 88211 | 0.72 | 0.358514 |
Target: 5'- cGCGGCGgCu-GGGCGcccgcgcgcuggcGGCGCGGCUCg -3' miRNA: 3'- -UGCUGCgGuuCCUGCa------------CCGCGCCGAG- -5' |
|||||||
23579 | 5' | -60.4 | NC_005261.1 | + | 50277 | 0.72 | 0.369485 |
Target: 5'- cCGcCGCCGgcGGGcCGUGGCggcgcGCGGCUCc -3' miRNA: 3'- uGCuGCGGU--UCCuGCACCG-----CGCCGAG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home