miRNA display CGI


Results 121 - 140 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 122967 0.71 0.427684
Target:  5'- gGCGGCGCCGccGGGGCGau-CGCGGCcCa -3'
miRNA:   3'- -UGCUGCGGU--UCCUGCaccGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 37285 0.71 0.427684
Target:  5'- cGCGcGCGCCGuGGACGcgGGCcugcaGCGGCUg -3'
miRNA:   3'- -UGC-UGCGGUuCCUGCa-CCG-----CGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 9495 0.71 0.410503
Target:  5'- gACGAUGCCGAcagcuacggcGGGCG-GGCGgGGCcCg -3'
miRNA:   3'- -UGCUGCGGUU----------CCUGCaCCGCgCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 94368 0.71 0.402075
Target:  5'- cGCGcCGCCGAGGACGa--CGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGUUCCUGCaccGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 43769 0.71 0.402075
Target:  5'- gACGACGCCGacgcggaggGGGACGcGGaCGCGGaCg- -3'
miRNA:   3'- -UGCUGCGGU---------UCCUGCaCC-GCGCC-Gag -5'
23579 5' -60.4 NC_005261.1 + 122856 0.72 0.33875
Target:  5'- gGCGGCGCCGAGGGCGccGaGCGCcGC-Cg -3'
miRNA:   3'- -UGCUGCGGUUCCUGCa-C-CGCGcCGaG- -5'
23579 5' -60.4 NC_005261.1 + 71837 0.72 0.341739
Target:  5'- gACGACGCCuucuuccugaaaagaGcgagGGGGCGccggGGCGCGaGCUCg -3'
miRNA:   3'- -UGCUGCGG---------------U----UCCUGCa---CCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 62920 0.72 0.346257
Target:  5'- cGCG-CGCCGccGACgGUGGCGCGGUg- -3'
miRNA:   3'- -UGCuGCGGUucCUG-CACCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 79869 0.72 0.346257
Target:  5'- gACGuCGCCGcacaccuGGACuGgccGGCGCGGCUCc -3'
miRNA:   3'- -UGCuGCGGUu------CCUG-Ca--CCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 55199 0.72 0.353882
Target:  5'- cGCGGCGagcggcccucCCGGGGGCGccGGCgacgGCGGCUCg -3'
miRNA:   3'- -UGCUGC----------GGUUCCUGCa-CCG----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 88211 0.72 0.358514
Target:  5'- cGCGGCGgCu-GGGCGcccgcgcgcuggcGGCGCGGCUCg -3'
miRNA:   3'- -UGCUGCgGuuCCUGCa------------CCGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 50277 0.72 0.369485
Target:  5'- cCGcCGCCGgcGGGcCGUGGCggcgcGCGGCUCc -3'
miRNA:   3'- uGCuGCGGU--UCCuGCACCG-----CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 67990 0.71 0.427684
Target:  5'- aGCG-CGCCGAGGuCGaguuUGcGCGCGGCg- -3'
miRNA:   3'- -UGCuGCGGUUCCuGC----AC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 22058 0.72 0.376658
Target:  5'- aGCGGCGUCGGGGACGcGGCcgcgaccGCGcGCUg -3'
miRNA:   3'- -UGCUGCGGUUCCUGCaCCG-------CGC-CGAg -5'
23579 5' -60.4 NC_005261.1 + 32184 0.71 0.385552
Target:  5'- cGCGGCGCUAGGGcCGggcaGCGCGGUg- -3'
miRNA:   3'- -UGCUGCGGUUCCuGCac--CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 68943 0.71 0.385552
Target:  5'- gGCGccccGCGCCGGGGucgGCGcGG-GCGGCUCg -3'
miRNA:   3'- -UGC----UGCGGUUCC---UGCaCCgCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 52795 0.71 0.388821
Target:  5'- gGCGGCGCCAAcaugucGGAgGcGGCGCgcgcgcgcgugcucgGGCUCg -3'
miRNA:   3'- -UGCUGCGGUU------CCUgCaCCGCG---------------CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 60733 0.71 0.388821
Target:  5'- gGCGAUGgCGggcggcaggaaguacGGGGCGggcgggGGCGCGGCUg -3'
miRNA:   3'- -UGCUGCgGU---------------UCCUGCa-----CCGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 46762 0.71 0.393757
Target:  5'- gGCGGCGCCGcuGGGAgGcgcgGGCGgGGC-Cg -3'
miRNA:   3'- -UGCUGCGGU--UCCUgCa---CCGCgCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 86924 0.71 0.393757
Target:  5'- gGCGGCGCCGgcgugcgcgAGGuAgGUGGCcGCGGC-Ca -3'
miRNA:   3'- -UGCUGCGGU---------UCC-UgCACCG-CGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.