miRNA display CGI


Results 41 - 60 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 131900 0.66 0.686788
Target:  5'- gACGGCGCgCAcccgcuGGACGggcuuuuUGGCGCGcGCg- -3'
miRNA:   3'- -UGCUGCG-GUu-----CCUGC-------ACCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 35766 0.66 0.70453
Target:  5'- gGCGGCucggGCCGAgacaggaggcccgcGGGCGccaUGGCGCGGgaCg -3'
miRNA:   3'- -UGCUG----CGGUU--------------CCUGC---ACCGCGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 89093 0.66 0.717229
Target:  5'- uGCGGC-CCGGGcGCGcUGGCGCGcGCg- -3'
miRNA:   3'- -UGCUGcGGUUCcUGC-ACCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 119480 0.66 0.687778
Target:  5'- -aGACGCCcuuGGGGACGccGGCGCcGC-Cg -3'
miRNA:   3'- ugCUGCGG---UUCCUGCa-CCGCGcCGaG- -5'
23579 5' -60.4 NC_005261.1 + 131494 0.66 0.717229
Target:  5'- uCGACGCCuucuuccGGcACGUGcGCGCGcaGUUCa -3'
miRNA:   3'- uGCUGCGGuu-----CC-UGCAC-CGCGC--CGAG- -5'
23579 5' -60.4 NC_005261.1 + 23547 0.67 0.656929
Target:  5'- gGCGGCaggaGCCGucgcagguggggcAGGGC-UGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU-------------UCCUGcACC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 54351 0.66 0.717229
Target:  5'- uCGAUgGCCAgucccAGGuccGCG-GGCaGCGGCUCg -3'
miRNA:   3'- uGCUG-CGGU-----UCC---UGCaCCG-CGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 138134 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 34357 0.66 0.667908
Target:  5'- gACGGgGCC--GGGCGccGCGCGGCg- -3'
miRNA:   3'- -UGCUgCGGuuCCUGCacCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 132110 0.66 0.667908
Target:  5'- cGCGACGCgCucguGGAgCGggacGCGCGGCUg -3'
miRNA:   3'- -UGCUGCG-Guu--CCU-GCac--CGCGCCGAg -5'
23579 5' -60.4 NC_005261.1 + 96940 0.66 0.677861
Target:  5'- -aGACGCCcacGGGCGcaucGGCGgGGCa- -3'
miRNA:   3'- ugCUGCGGuu-CCUGCa---CCGCgCCGag -5'
23579 5' -60.4 NC_005261.1 + 96354 0.66 0.677861
Target:  5'- cUGACGCCcugacuGGCcUGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuc---CUGcACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 137034 0.66 0.677861
Target:  5'- aACGGCGUCGguggAGGGCGgaccgucggcaGGCGCGGaggCg -3'
miRNA:   3'- -UGCUGCGGU----UCCUGCa----------CCGCGCCga-G- -5'
23579 5' -60.4 NC_005261.1 + 19048 0.66 0.687778
Target:  5'- -aGcCGCCAggcagGGGuACGggcuGCGCGGCUCu -3'
miRNA:   3'- ugCuGCGGU-----UCC-UGCac--CGCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 29804 0.66 0.687778
Target:  5'- cCGGCGCCGGcGGCGcgGGCGCccgcgccgcGCUCg -3'
miRNA:   3'- uGCUGCGGUUcCUGCa-CCGCGc--------CGAG- -5'
23579 5' -60.4 NC_005261.1 + 136788 0.66 0.69765
Target:  5'- gGCGAgGCgGugcAGGccaGUGGCG-GGCUCg -3'
miRNA:   3'- -UGCUgCGgU---UCCug-CACCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 131585 0.66 0.69765
Target:  5'- cGCGACgGCCGAGGccuACGcGcGCGCGcGCa- -3'
miRNA:   3'- -UGCUG-CGGUUCC---UGCaC-CGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 16261 0.66 0.70747
Target:  5'- -gGGcCGCCGGGGcCG-GGCuuCGGCUCg -3'
miRNA:   3'- ugCU-GCGGUUCCuGCaCCGc-GCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 136621 0.66 0.70747
Target:  5'- cGCGcGCGCCGAGGGCGgcgGGaa-GGCc- -3'
miRNA:   3'- -UGC-UGCGGUUCCUGCa--CCgcgCCGag -5'
23579 5' -60.4 NC_005261.1 + 108744 0.66 0.70747
Target:  5'- gGCGGCGCCGcGG-CGUccgcGGCGCGccGCg- -3'
miRNA:   3'- -UGCUGCGGUuCCuGCA----CCGCGC--CGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.