miRNA display CGI


Results 61 - 80 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 137034 0.66 0.677861
Target:  5'- aACGGCGUCGguggAGGGCGgaccgucggcaGGCGCGGaggCg -3'
miRNA:   3'- -UGCUGCGGU----UCCUGCa----------CCGCGCCga-G- -5'
23579 5' -60.4 NC_005261.1 + 57962 0.66 0.677861
Target:  5'- uGCGcACGCCGGcGACGcaGGCGCGcGCg- -3'
miRNA:   3'- -UGC-UGCGGUUcCUGCa-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 54216 0.66 0.717229
Target:  5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3'
miRNA:   3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 82350 0.66 0.70747
Target:  5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3'
miRNA:   3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 75471 0.66 0.70747
Target:  5'- -aGGCGCC--GGGCGgcGGCGCGGg-- -3'
miRNA:   3'- ugCUGCGGuuCCUGCa-CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 5486 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 48301 0.66 0.69765
Target:  5'- aGCGAgGCCucggGGGGCGcgucgGGCcCgGGCUCg -3'
miRNA:   3'- -UGCUgCGGu---UCCUGCa----CCGcG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 39434 0.66 0.69765
Target:  5'- cCGGCGCguccgCAGGGccccgagccuccGCGcGGCGCGGCg- -3'
miRNA:   3'- uGCUGCG-----GUUCC------------UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 97670 0.66 0.687778
Target:  5'- cCGGCGUCcgcGGGGCuugGGCGgGGCUg -3'
miRNA:   3'- uGCUGCGGu--UCCUGca-CCGCgCCGAg -5'
23579 5' -60.4 NC_005261.1 + 14965 0.66 0.687778
Target:  5'- gGCG-UGCCuGGGGCGacuGCGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGuUCCUGCac-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 133300 0.67 0.626897
Target:  5'- gUGGcCGCCAAGGACGacUGGCugcucgcGCaGCUCc -3'
miRNA:   3'- uGCU-GCGGUUCCUGC--ACCG-------CGcCGAG- -5'
23579 5' -60.4 NC_005261.1 + 113036 0.67 0.627899
Target:  5'- aGCGG-GCCGcgcGcGGCGUGGCGCGccaccGCUCg -3'
miRNA:   3'- -UGCUgCGGUu--C-CUGCACCGCGC-----CGAG- -5'
23579 5' -60.4 NC_005261.1 + 76741 0.66 0.674879
Target:  5'- cCGACGUgcuCGcGGACGUGGCGCaccccgcguucuucGGCg- -3'
miRNA:   3'- uGCUGCG---GUuCCUGCACCGCG--------------CCGag -5'
23579 5' -60.4 NC_005261.1 + 32328 0.66 0.667908
Target:  5'- cGCGGCGCCc--GGCGUGGCcUGGgaCg -3'
miRNA:   3'- -UGCUGCGGuucCUGCACCGcGCCgaG- -5'
23579 5' -60.4 NC_005261.1 + 138134 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 23547 0.67 0.656929
Target:  5'- gGCGGCaggaGCCGucgcagguggggcAGGGC-UGGcCGUGGCUCa -3'
miRNA:   3'- -UGCUG----CGGU-------------UCCUGcACC-GCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 120931 0.67 0.647928
Target:  5'- cGCGAgCGCCGGGcGCGggaaGGUGgaGGCUCg -3'
miRNA:   3'- -UGCU-GCGGUUCcUGCa---CCGCg-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 113278 0.67 0.647928
Target:  5'- gACGGCuaCGAGGGCGUGGUccucucgcugccGCGGg-- -3'
miRNA:   3'- -UGCUGcgGUUCCUGCACCG------------CGCCgag -5'
23579 5' -60.4 NC_005261.1 + 76155 0.67 0.637915
Target:  5'- gGCGGCGCaCGAcGcCGUGGCGCuGCa- -3'
miRNA:   3'- -UGCUGCG-GUUcCuGCACCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 48431 0.67 0.637915
Target:  5'- gGCGGuacaGCuCGcGGuGCGUGGCGCGGC-Cg -3'
miRNA:   3'- -UGCUg---CG-GUuCC-UGCACCGCGCCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.