miRNA display CGI


Results 81 - 100 of 544 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 46806 0.66 0.667908
Target:  5'- cGCGGCGCgCGcGGAUGgcgcgcgccaGGCGCGcguGCUCg -3'
miRNA:   3'- -UGCUGCG-GUuCCUGCa---------CCGCGC---CGAG- -5'
23579 5' -60.4 NC_005261.1 + 15027 0.67 0.661923
Target:  5'- uCGGCggguGCCGGGGGCGUagcggggggggucggGGuCGCGGCg- -3'
miRNA:   3'- uGCUG----CGGUUCCUGCA---------------CC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 463 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 85939 0.67 0.654929
Target:  5'- gAUGGCgGCCAGGGcgccgcggaagcugGCGUGGUccgugauuGCGcGCUCg -3'
miRNA:   3'- -UGCUG-CGGUUCC--------------UGCACCG--------CGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 116478 0.67 0.647928
Target:  5'- cCGGCGCgGgcGGGGCGgGcGCGCGGUa- -3'
miRNA:   3'- uGCUGCGgU--UCCUGCaC-CGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 76155 0.67 0.637915
Target:  5'- gGCGGCGCaCGAcGcCGUGGCGCuGCa- -3'
miRNA:   3'- -UGCUGCG-GUUcCuGCACCGCGcCGag -5'
23579 5' -60.4 NC_005261.1 + 48431 0.67 0.637915
Target:  5'- gGCGGuacaGCuCGcGGuGCGUGGCGCGGC-Cg -3'
miRNA:   3'- -UGCUg---CG-GUuCC-UGCACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 14965 0.66 0.687778
Target:  5'- gGCG-UGCCuGGGGCGacuGCGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGuUCCUGCac-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 97670 0.66 0.687778
Target:  5'- cCGGCGUCcgcGGGGCuugGGCGgGGCUg -3'
miRNA:   3'- uGCUGCGGu--UCCUGca-CCGCgCCGAg -5'
23579 5' -60.4 NC_005261.1 + 39434 0.66 0.69765
Target:  5'- cCGGCGCguccgCAGGGccccgagccuccGCGcGGCGCGGCg- -3'
miRNA:   3'- uGCUGCG-----GUUCC------------UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 96069 0.67 0.607882
Target:  5'- cACGACGcCCGAGcAgGUGaGUGCGGCcCg -3'
miRNA:   3'- -UGCUGC-GGUUCcUgCAC-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 59392 0.67 0.607882
Target:  5'- cACGGCGCCGAgcccGGGCucgccGGCGcCGGCg- -3'
miRNA:   3'- -UGCUGCGGUU----CCUGca---CCGC-GCCGag -5'
23579 5' -60.4 NC_005261.1 + 23733 0.67 0.607882
Target:  5'- gGCcGCGCCGAGGcGCGUccgggaggGGCG-GGCUUg -3'
miRNA:   3'- -UGcUGCGGUUCC-UGCA--------CCGCgCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 84956 0.68 0.597896
Target:  5'- gGCGGcCGCCGAGG-CGUcgGGCGCGuccGCg- -3'
miRNA:   3'- -UGCU-GCGGUUCCuGCA--CCGCGC---CGag -5'
23579 5' -60.4 NC_005261.1 + 44257 0.68 0.597896
Target:  5'- cCGACGCCGcggcgcgcgggGGGGCGgGGCccgccgccaGCGGCg- -3'
miRNA:   3'- uGCUGCGGU-----------UCCUGCaCCG---------CGCCGag -5'
23579 5' -60.4 NC_005261.1 + 54216 0.66 0.717229
Target:  5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3'
miRNA:   3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 82350 0.66 0.70747
Target:  5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3'
miRNA:   3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 75471 0.66 0.70747
Target:  5'- -aGGCGCC--GGGCGgcGGCGCGGg-- -3'
miRNA:   3'- ugCUGCGGuuCCUGCa-CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 5486 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 48301 0.66 0.69765
Target:  5'- aGCGAgGCCucggGGGGCGcgucgGGCcCgGGCUCg -3'
miRNA:   3'- -UGCUgCGGu---UCCUGCa----CCGcG-CCGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.