miRNA display CGI


Results 101 - 120 of 544 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23579 5' -60.4 NC_005261.1 + 32372 0.67 0.607882
Target:  5'- -aGACGCUGgugcAGG-CGcGGCGCGGCg- -3'
miRNA:   3'- ugCUGCGGU----UCCuGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 29111 0.68 0.597896
Target:  5'- cCGACGCCGAGGGgagcCcUGGCGCcggggGGCg- -3'
miRNA:   3'- uGCUGCGGUUCCU----GcACCGCG-----CCGag -5'
23579 5' -60.4 NC_005261.1 + 58293 0.68 0.587935
Target:  5'- gGCG-CGCCGGGGggcGCGgggagGGgGCGGCcCa -3'
miRNA:   3'- -UGCuGCGGUUCC---UGCa----CCgCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 5229 0.68 0.578004
Target:  5'- gAUGAgGUCGuacAGGucgaGCGUGGC-CGGCUCg -3'
miRNA:   3'- -UGCUgCGGU---UCC----UGCACCGcGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 61550 0.68 0.578004
Target:  5'- cGCGGCGCCGccGACGaucugauggUGGCGCuGGUg- -3'
miRNA:   3'- -UGCUGCGGUucCUGC---------ACCGCG-CCGag -5'
23579 5' -60.4 NC_005261.1 + 85939 0.67 0.654929
Target:  5'- gAUGGCgGCCAGGGcgccgcggaagcugGCGUGGUccgugauuGCGcGCUCg -3'
miRNA:   3'- -UGCUG-CGGUUCC--------------UGCACCG--------CGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 463 0.67 0.657928
Target:  5'- cGCGACgGCCGgcGGGA--UGGCGCGGg-- -3'
miRNA:   3'- -UGCUG-CGGU--UCCUgcACCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 54216 0.66 0.717229
Target:  5'- cCGAUGaCCAgcccgcAGGucACGcGGCGCGcGCUCa -3'
miRNA:   3'- uGCUGC-GGU------UCC--UGCaCCGCGC-CGAG- -5'
23579 5' -60.4 NC_005261.1 + 82350 0.66 0.70747
Target:  5'- cCGGCGCaCGucGGCGUcGGCGCGcGCg- -3'
miRNA:   3'- uGCUGCG-GUucCUGCA-CCGCGC-CGag -5'
23579 5' -60.4 NC_005261.1 + 75471 0.66 0.70747
Target:  5'- -aGGCGCC--GGGCGgcGGCGCGGg-- -3'
miRNA:   3'- ugCUGCGGuuCCUGCa-CCGCGCCgag -5'
23579 5' -60.4 NC_005261.1 + 5486 0.66 0.70747
Target:  5'- cGCGcGCGCCGGGGGguagcUGgGGcCGCGGCa- -3'
miRNA:   3'- -UGC-UGCGGUUCCU-----GCaCC-GCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 48301 0.66 0.69765
Target:  5'- aGCGAgGCCucggGGGGCGcgucgGGCcCgGGCUCg -3'
miRNA:   3'- -UGCUgCGGu---UCCUGCa----CCGcG-CCGAG- -5'
23579 5' -60.4 NC_005261.1 + 39434 0.66 0.69765
Target:  5'- cCGGCGCguccgCAGGGccccgagccuccGCGcGGCGCGGCg- -3'
miRNA:   3'- uGCUGCG-----GUUCC------------UGCaCCGCGCCGag -5'
23579 5' -60.4 NC_005261.1 + 97670 0.66 0.687778
Target:  5'- cCGGCGUCcgcGGGGCuugGGCGgGGCUg -3'
miRNA:   3'- uGCUGCGGu--UCCUGca-CCGCgCCGAg -5'
23579 5' -60.4 NC_005261.1 + 14965 0.66 0.687778
Target:  5'- gGCG-UGCCuGGGGCGacuGCGCGGC-Cg -3'
miRNA:   3'- -UGCuGCGGuUCCUGCac-CGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 119991 0.66 0.677861
Target:  5'- cCGACGCUgGAGGGCGccGGCuacGCGGC-Cg -3'
miRNA:   3'- uGCUGCGG-UUCCUGCa-CCG---CGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 96318 0.66 0.677861
Target:  5'- cUGACGCCcugacuGGCcUGGCGCGGC-Cg -3'
miRNA:   3'- uGCUGCGGuuc---CUGcACCGCGCCGaG- -5'
23579 5' -60.4 NC_005261.1 + 69209 0.66 0.677861
Target:  5'- aACGACGUCcuccGGGagcugugcGCGcUGGgGCGGUUCg -3'
miRNA:   3'- -UGCUGCGGu---UCC--------UGC-ACCgCGCCGAG- -5'
23579 5' -60.4 NC_005261.1 + 46806 0.66 0.667908
Target:  5'- cGCGGCGCgCGcGGAUGgcgcgcgccaGGCGCGcguGCUCg -3'
miRNA:   3'- -UGCUGCG-GUuCCUGCa---------CCGCGC---CGAG- -5'
23579 5' -60.4 NC_005261.1 + 15027 0.67 0.661923
Target:  5'- uCGGCggguGCCGGGGGCGUagcggggggggucggGGuCGCGGCg- -3'
miRNA:   3'- uGCUG----CGGUUCCUGCA---------------CC-GCGCCGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.