miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2358 3' -52.7 NC_001416.1 + 3377 0.69 0.644601
Target:  5'- -aUACCGGcGACAGCCGGAacugccgUGCcGGUg -3'
miRNA:   3'- ucGUGGCUaUUGUUGGCCU-------ACGaCCA- -5'
2358 3' -52.7 NC_001416.1 + 5267 0.66 0.767598
Target:  5'- cAGCACCGAUGcgaucaccguCAugCGuGAUGCacUGGa -3'
miRNA:   3'- -UCGUGGCUAUu---------GUugGC-CUACG--ACCa -5'
2358 3' -52.7 NC_001416.1 + 5858 0.77 0.24863
Target:  5'- cGGUugCGGUAugAGCCGGGUcacuguugcccugcgGCUGGUa -3'
miRNA:   3'- -UCGugGCUAUugUUGGCCUA---------------CGACCA- -5'
2358 3' -52.7 NC_001416.1 + 7762 0.69 0.611549
Target:  5'- cGCACCuGAcuGCucACCGGAUGUaaUGGUg -3'
miRNA:   3'- uCGUGG-CUauUGu-UGGCCUACG--ACCA- -5'
2358 3' -52.7 NC_001416.1 + 8755 0.66 0.778032
Target:  5'- aGGUGCCGGauuCAgaGCUGGAUGCgUGGa -3'
miRNA:   3'- -UCGUGGCUauuGU--UGGCCUACG-ACCa -5'
2358 3' -52.7 NC_001416.1 + 10911 0.7 0.566272
Target:  5'- cGCuggCGGUGGCGACCGGugcGCUGGc -3'
miRNA:   3'- uCGug-GCUAUUGUUGGCCua-CGACCa -5'
2358 3' -52.7 NC_001416.1 + 15238 0.69 0.634342
Target:  5'- uGGCACCGAgagaaAACaGGAUGCcGGUc -3'
miRNA:   3'- -UCGUGGCUauug-UUGgCCUACGaCCA- -5'
2358 3' -52.7 NC_001416.1 + 15735 0.68 0.668485
Target:  5'- -cCACCG-UGAC-ACCGGAuaUGUUGGUa -3'
miRNA:   3'- ucGUGGCuAUUGuUGGCCU--ACGACCA- -5'
2358 3' -52.7 NC_001416.1 + 16955 0.67 0.735449
Target:  5'- cAGCACCGGUGGCGuguGCUGGcgGUg--- -3'
miRNA:   3'- -UCGUGGCUAUUGU---UGGCCuaCGacca -5'
2358 3' -52.7 NC_001416.1 + 21883 1.08 0.001546
Target:  5'- gAGCACCGAUAACAACCGGAUGCUGGUg -3'
miRNA:   3'- -UCGUGGCUAUUGUUGGCCUACGACCA- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.