miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2358 5' -49.7 NC_001416.1 + 27121 0.66 0.914893
Target:  5'- -aACCcACUGUuauucAUGuUGCAUgGUGCACUg -3'
miRNA:   3'- uaUGGuUGACA-----UAC-GCGUA-CACGUGG- -5'
2358 5' -49.7 NC_001416.1 + 44383 0.66 0.908043
Target:  5'- -aGCC-GCUGUAUGaCGCucuggugGUGCaauGCCa -3'
miRNA:   3'- uaUGGuUGACAUAC-GCGua-----CACG---UGG- -5'
2358 5' -49.7 NC_001416.1 + 14132 0.66 0.908043
Target:  5'- -aAUCAGCgauucugGCGCAcgcccggcgaUGUGCGCCa -3'
miRNA:   3'- uaUGGUUGacaua--CGCGU----------ACACGUGG- -5'
2358 5' -49.7 NC_001416.1 + 32714 0.67 0.893415
Target:  5'- gAUGCCAGCg--AUGCGCA-GUuCAUCg -3'
miRNA:   3'- -UAUGGUUGacaUACGCGUaCAcGUGG- -5'
2358 5' -49.7 NC_001416.1 + 2574 0.67 0.885647
Target:  5'- cUGCCAgcgggaaauACUG-AUGCGCA---GCGCCg -3'
miRNA:   3'- uAUGGU---------UGACaUACGCGUacaCGUGG- -5'
2358 5' -49.7 NC_001416.1 + 46499 0.67 0.877584
Target:  5'- uAUACUccGCUGgaaGCGCGUGUGUAUUg -3'
miRNA:   3'- -UAUGGu-UGACauaCGCGUACACGUGG- -5'
2358 5' -49.7 NC_001416.1 + 5691 0.68 0.851698
Target:  5'- --uCCAGCgcaGUGucacUGCGCGccUGUGCACUc -3'
miRNA:   3'- uauGGUUGa--CAU----ACGCGU--ACACGUGG- -5'
2358 5' -49.7 NC_001416.1 + 5169 0.68 0.842532
Target:  5'- uAUACCGGcCUGUccGUGCAgguUGUGCuggauACCg -3'
miRNA:   3'- -UAUGGUU-GACAuaCGCGU---ACACG-----UGG- -5'
2358 5' -49.7 NC_001416.1 + 21907 0.68 0.813571
Target:  5'- -aACCAauACUGaaagaAUGgGCAUGaGCACCg -3'
miRNA:   3'- uaUGGU--UGACa----UACgCGUACaCGUGG- -5'
2358 5' -49.7 NC_001416.1 + 6209 0.69 0.771982
Target:  5'- -cGCCAGCaGUuggGCGguUGUGUACa -3'
miRNA:   3'- uaUGGUUGaCAua-CGCguACACGUGg -5'
2358 5' -49.7 NC_001416.1 + 12960 0.72 0.611515
Target:  5'- -gACCGGCUGUcugccAUGCuGCccgGUGUACCg -3'
miRNA:   3'- uaUGGUUGACA-----UACG-CGua-CACGUGG- -5'
2358 5' -49.7 NC_001416.1 + 12842 0.73 0.530528
Target:  5'- uUACCGGCUG-AUGCGCGgcuaUGcCACCg -3'
miRNA:   3'- uAUGGUUGACaUACGCGUac--AC-GUGG- -5'
2358 5' -49.7 NC_001416.1 + 21661 0.76 0.383446
Target:  5'- -aACCAcUUGUGUGgGCAUGaGCACCc -3'
miRNA:   3'- uaUGGUuGACAUACgCGUACaCGUGG- -5'
2358 5' -49.7 NC_001416.1 + 21849 1.12 0.001698
Target:  5'- aAUACCAACUGUAUGCGCAUGUGCACCg -3'
miRNA:   3'- -UAUGGUUGACAUACGCGUACACGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.