miRNA display CGI

Results 81 - 100 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	119611	0.66	0.411569
	Target:  5'- uGGCcucGCGgauuucGGCGCGcGCGACggacaCCUCGCAc -3' miRNA:   3'- uCCGu--CGC------CCGCGC-CGCUG-----GGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	67010	0.66	0.411569
	Target:  5'- aGGGCcGCGuGCGCGcGCGcACCaUCGCGc -3' miRNA:   3'- -UCCGuCGCcCGCGC-CGC-UGGgAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	29908	0.66	0.46278
	Target:  5'- cGGGUcGCGGaGCacGCGGCGGCCgUCu-- -3' miRNA:   3'- -UCCGuCGCC-CG--CGCCGCUGGgAGcgu -5'
23580	3'	-65.7	NC_005261.1	+	106109	0.66	0.46278
	Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3' miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	92021	0.66	0.428253
	Target:  5'- cGGCcuucgAGC-GGCGCGGCGACgUgCGCu -3' miRNA:   3'- uCCG-----UCGcCCGCGCCGCUGgGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	75047	0.66	0.436743
	Target:  5'- cGGaGGUGGGCGCgGGCGugUCgcggaGCAc -3' miRNA:   3'- uCCgUCGCCCGCG-CCGCugGGag---CGU- -5'
23580	3'	-65.7	NC_005261.1	+	117892	0.66	0.44533
	Target:  5'- cGGCAgccGCGGGCgucgcucgugcGCGGCucggGGCCCagUCGCc -3' miRNA:   3'- uCCGU---CGCCCG-----------CGCCG----CUGGG--AGCGu -5'
23580	3'	-65.7	NC_005261.1	+	5129	0.66	0.411569
	Target:  5'- aAGGCcGCGcGGuUGaCGGCGGCCUUgCGCu -3' miRNA:   3'- -UCCGuCGC-CC-GC-GCCGCUGGGA-GCGu -5'
23580	3'	-65.7	NC_005261.1	+	32255	0.66	0.416532
	Target:  5'- cGGGCGGCgucgacgccgcgcuGGGCGCcgaggccaucgacGGCG-CgCUCGCGg -3' miRNA:   3'- -UCCGUCG--------------CCCGCG-------------CCGCuGgGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	45916	0.66	0.44533
	Target:  5'- uGGGCcgcGCGGaccGCGCGGCGcucAUCCUgGCc -3' miRNA:   3'- -UCCGu--CGCC---CGCGCCGC---UGGGAgCGu -5'
23580	3'	-65.7	NC_005261.1	+	35191	0.66	0.44533
	Target:  5'- cAGGCGcUGGGCcCuGCGGCCCgCGCGu -3' miRNA:   3'- -UCCGUcGCCCGcGcCGCUGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	29632	0.66	0.44533
	Target:  5'- gAGGCGcuggugcccGUGGGCGaGGCcaacGCCUUCGCGc -3' miRNA:   3'- -UCCGU---------CGCCCGCgCCGc---UGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	38181	0.66	0.436743
	Target:  5'- cGGCGGCGGcGCGCucgaGCuGACgCC-CGCGg -3' miRNA:   3'- uCCGUCGCC-CGCGc---CG-CUG-GGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	14310	0.66	0.411569
	Target:  5'- cGGGCGcGCaccugcucGGGCcgcaccccacaGCGGCGGCCUUcCGCGa -3' miRNA:   3'- -UCCGU-CG--------CCCG-----------CGCCGCUGGGA-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	53223	0.66	0.461899
	Target:  5'- cGGUcugGGUGGGaUGCGGCGccagcucGCCCcgCGCGu -3' miRNA:   3'- uCCG---UCGCCC-GCGCCGC-------UGGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	3364	0.66	0.457507
	Target:  5'- gGGGCccgcGgGGGCGCgGGCGccuuguccccguccUCCUCGCAg -3' miRNA:   3'- -UCCGu---CgCCCGCG-CCGCu-------------GGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	125496	0.66	0.411569
	Target:  5'- cGGGCccgcccAGgGGGC-CGGCgGGCCCgCGCGc -3' miRNA:   3'- -UCCG------UCgCCCGcGCCG-CUGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	64889	0.66	0.43589
	Target:  5'- cGGCGcCGGGCGgagacgaCGucGUGACCCUCGUg -3' miRNA:   3'- uCCGUcGCCCGC-------GC--CGCUGGGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	28669	0.66	0.409102
	Target:  5'- cGGCAGCggcgagggGGGcCGCGGCGguuguggcgaggggGCCCgcggcgggcgCGCAa -3' miRNA:   3'- uCCGUCG--------CCC-GCGCCGC--------------UGGGa---------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	31437	0.66	0.46278
	Target:  5'- cGGCGcugguGCGGGCGCaGaCGGCgCUgGCGc -3' miRNA:   3'- uCCGU-----CGCCCGCGcC-GCUGgGAgCGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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