miRNA display CGI

Results 61 - 80 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	86857	0.75	0.122616
	Target:  5'- cGGCGcucaacgccGcCGGGCGCGGCGGCCUUgGCc -3' miRNA:   3'- uCCGU---------C-GCCCGCGCCGCUGGGAgCGu -5'
23580	3'	-65.7	NC_005261.1	+	39903	0.75	0.122616
	Target:  5'- -uGCAGCuGGCGCGcGCGGCCgUCGCc -3' miRNA:   3'- ucCGUCGcCCGCGC-CGCUGGgAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	75579	0.75	0.122616
	Target:  5'- uGGGCGGC-GGCGCGGCG-CUCgcgCGCGc -3' miRNA:   3'- -UCCGUCGcCCGCGCCGCuGGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	92812	0.75	0.119619
	Target:  5'- cGGGCGcGCGGGCGUGG-GACCgCgCGCAg -3' miRNA:   3'- -UCCGU-CGCCCGCGCCgCUGG-GaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	2637	0.75	0.116691
	Target:  5'- gGGGCccagcacgcgGGCGGGCaGCGGCGGCUCcCGCc -3' miRNA:   3'- -UCCG----------UCGCCCG-CGCCGCUGGGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	93736	0.75	0.116691
	Target:  5'- cGGCAGCGcGCGCuucguacucGGCGGCCCgcgCGCGc -3' miRNA:   3'- uCCGUCGCcCGCG---------CCGCUGGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	127384	0.75	0.111034
	Target:  5'- uGGCGGCGGcgaggaGCcCGGCG-CCCUCGCAc -3' miRNA:   3'- uCCGUCGCC------CGcGCCGCuGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	131426	0.75	0.108303
	Target:  5'- cGGCAGCGGcGC-CGGCGcccCCCUUGCGc -3' miRNA:   3'- uCCGUCGCC-CGcGCCGCu--GGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	57300	0.75	0.11383
	Target:  5'- -cGCAGCGGGCGCaagguGGUGGCCUUCGa- -3' miRNA:   3'- ucCGUCGCCCGCG-----CCGCUGGGAGCgu -5'
23580	3'	-65.7	NC_005261.1	+	92813	0.75	0.122616
	Target:  5'- cGGCGGCGGGCGCaGGCG-CCgcaGCAg -3' miRNA:   3'- uCCGUCGCCCGCG-CCGCuGGgagCGU- -5'
23580	3'	-65.7	NC_005261.1	+	60717	0.75	0.119619
	Target:  5'- gGGGCGG-GGGCGCGGCGGCgaUgGCGg -3' miRNA:   3'- -UCCGUCgCCCGCGCCGCUGggAgCGU- -5'
23580	3'	-65.7	NC_005261.1	+	125710	0.75	0.119619
	Target:  5'- cGGCGGC-GGCGCGG-GGCCCcgCGCGg -3' miRNA:   3'- uCCGUCGcCCGCGCCgCUGGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	107154	0.75	0.116691
	Target:  5'- gGGGCccagcacgcgGGCGGGCaGCGGCGGCUCcCGCc -3' miRNA:   3'- -UCCG----------UCGCCCG-CGCCGCUGGGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	38151	0.75	0.116691
	Target:  5'- cGGCGGCgagGGGCGCGGCGcGCCCcCGg- -3' miRNA:   3'- uCCGUCG---CCCGCGCCGC-UGGGaGCgu -5'
23580	3'	-65.7	NC_005261.1	+	20581	0.75	0.116691
	Target:  5'- gGGGCgcuuagcgGGgGGGCGCGGCGcggGCCCggCGCGg -3' miRNA:   3'- -UCCG--------UCgCCCGCGCCGC---UGGGa-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	65274	0.75	0.111034
	Target:  5'- cGGCGGCGGGCGCGaGCcgGugCCggCGCc -3' miRNA:   3'- uCCGUCGCCCGCGC-CG--CugGGa-GCGu -5'
23580	3'	-65.7	NC_005261.1	+	125235	0.75	0.110758
	Target:  5'- cGGGCucGCGGGCcuaaucgGCGucGCGGCCCUCGCu -3' miRNA:   3'- -UCCGu-CGCCCG-------CGC--CGCUGGGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	38326	0.75	0.105635
	Target:  5'- gAGGCGcucGCGGGCcggGUGGCGgucaacGCCCUCGCGc -3' miRNA:   3'- -UCCGU---CGCCCG---CGCCGC------UGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	103614	0.75	0.11383
	Target:  5'- cGGCAGCGcgggaGGCgGCGGCGGCCaUCGCc -3' miRNA:   3'- uCCGUCGC-----CCG-CGCCGCUGGgAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	97844	0.75	0.116691
	Target:  5'- gGGGCGGCGGGCGCcgccGCGGCag-CGCGg -3' miRNA:   3'- -UCCGUCGCCCGCGc---CGCUGggaGCGU- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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