miRNA display CGI


Results 81 - 100 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 75579 0.75 0.122616
Target:  5'- uGGGCGGC-GGCGCGGCG-CUCgcgCGCGc -3'
miRNA:   3'- -UCCGUCGcCCGCGCCGCuGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 39903 0.75 0.122616
Target:  5'- -uGCAGCuGGCGCGcGCGGCCgUCGCc -3'
miRNA:   3'- ucCGUCGcCCGCGC-CGCUGGgAGCGu -5'
23580 3' -65.7 NC_005261.1 + 86857 0.75 0.122616
Target:  5'- cGGCGcucaacgccGcCGGGCGCGGCGGCCUUgGCc -3'
miRNA:   3'- uCCGU---------C-GCCCGCGCCGCUGGGAgCGu -5'
23580 3' -65.7 NC_005261.1 + 118069 0.74 0.128819
Target:  5'- cGGCAGCGGccgcagccGCGCucgucugcuGGCGGCCCgccgCGCAg -3'
miRNA:   3'- uCCGUCGCC--------CGCG---------CCGCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 116440 0.74 0.125682
Target:  5'- cGGcCGGCGGcUGCGGCGGCCCgcgcCGCGg -3'
miRNA:   3'- uCC-GUCGCCcGCGCCGCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 79825 0.74 0.132028
Target:  5'- -cGCGGC-GGCGCGGCGGCCagCGCAg -3'
miRNA:   3'- ucCGUCGcCCGCGCCGCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 86189 0.74 0.128819
Target:  5'- aGGaGCGGCGGGCGgGGCGGgcguuggCCUCGUAc -3'
miRNA:   3'- -UC-CGUCGCCCGCgCCGCUg------GGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 34847 0.74 0.135311
Target:  5'- cAGGCGGcCGcGGCGCGGCGGCg--CGCGg -3'
miRNA:   3'- -UCCGUC-GC-CCGCGCCGCUGggaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 105559 0.74 0.128819
Target:  5'- aGGGCGGCGGGCggcggcguuaGCGGCGcggggggcugGCCC-CGCu -3'
miRNA:   3'- -UCCGUCGCCCG----------CGCCGC----------UGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 19375 0.74 0.128819
Target:  5'- aGGGCcGCGGGCGCGcCG-CCCUcCGCGc -3'
miRNA:   3'- -UCCGuCGCCCGCGCcGCuGGGA-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 2749 0.74 0.128819
Target:  5'- -cGCGGCGGGCcgucGCGGCGGgCCUCGa- -3'
miRNA:   3'- ucCGUCGCCCG----CGCCGCUgGGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 107266 0.74 0.128819
Target:  5'- -cGCGGCGGGCcgucGCGGCGGgCCUCGa- -3'
miRNA:   3'- ucCGUCGCCCG----CGCCGCUgGGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 60660 0.74 0.135311
Target:  5'- cGGGguGCcaGGGCGCGGCGgcGCCaCUgGCGg -3'
miRNA:   3'- -UCCguCG--CCCGCGCCGC--UGG-GAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 4948 0.74 0.135311
Target:  5'- cGGCcacgaGGCGGGCGcCGGCG-CCCUgGUAc -3'
miRNA:   3'- uCCG-----UCGCCCGC-GCCGCuGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 21697 0.74 0.135311
Target:  5'- -cGCGcGCGGGCgcggaGCGGCGGgCCUCGCGc -3'
miRNA:   3'- ucCGU-CGCCCG-----CGCCGCUgGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 79070 0.74 0.135311
Target:  5'- cGGGCuggGGCGGGCGCcGCGcGCCCggggCGCGc -3'
miRNA:   3'- -UCCG---UCGCCCGCGcCGC-UGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 122488 0.74 0.135311
Target:  5'- gAGGCGGuCGGccugcGCGCGGaCGGCCCcgUCGCGu -3'
miRNA:   3'- -UCCGUC-GCC-----CGCGCC-GCUGGG--AGCGU- -5'
23580 3' -65.7 NC_005261.1 + 5648 0.74 0.138668
Target:  5'- cGGGCGuccGCGGGCGCGcCGACguCUUCGCAg -3'
miRNA:   3'- -UCCGU---CGCCCGCGCcGCUG--GGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 53206 0.74 0.142102
Target:  5'- uGGCcG-GGGCGCGGCGGCCg-CGCGa -3'
miRNA:   3'- uCCGuCgCCCGCGCCGCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135449 0.74 0.125682
Target:  5'- cAGGCGgcGCGGGCGCuGCGGgaCCUCGUAc -3'
miRNA:   3'- -UCCGU--CGCCCGCGcCGCUg-GGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.