miRNA display CGI


Results 81 - 100 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 14532 0.7 0.25667
Target:  5'- cGGCGGUGG-CGCGGCcGCCCg-GCGa -3'
miRNA:   3'- uCCGUCGCCcGCGCCGcUGGGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 14847 0.7 0.25033
Target:  5'- cGGCAGCaGGCgGCGGCGcaucgcgcaguucGCCaUCGCGg -3'
miRNA:   3'- uCCGUCGcCCG-CGCCGC-------------UGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 14947 0.66 0.44533
Target:  5'- uGGCgcuggaagcgAGCGGGCGUgccuggGGCGACUg-CGCGg -3'
miRNA:   3'- uCCG----------UCGCCCGCG------CCGCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 15163 0.7 0.250901
Target:  5'- uGGgGGUGGGCguagcgGCGGCGGCgCC-CGCGg -3'
miRNA:   3'- uCCgUCGCCCG------CGCCGCUG-GGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 15274 0.66 0.453137
Target:  5'- cGGCGGCgccgccgGGGCGCGcggucGCGGCCUccgggUCGUc -3'
miRNA:   3'- uCCGUCG-------CCCGCGC-----CGCUGGG-----AGCGu -5'
23580 3' -65.7 NC_005261.1 + 15421 0.71 0.218509
Target:  5'- cGGGUgcuGGCGGGCGC-GCGGCUCUCuaAg -3'
miRNA:   3'- -UCCG---UCGCCCGCGcCGCUGGGAGcgU- -5'
23580 3' -65.7 NC_005261.1 + 15499 0.68 0.341712
Target:  5'- -cGCuGCGGGCGgGGCGugUgUCgGCGu -3'
miRNA:   3'- ucCGuCGCCCGCgCCGCugGgAG-CGU- -5'
23580 3' -65.7 NC_005261.1 + 15779 0.66 0.428253
Target:  5'- aAGGCcgcuGGCGGGCGCcgcccgcGCGGCCagCGCc -3'
miRNA:   3'- -UCCG----UCGCCCGCGc------CGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 15958 0.68 0.3345
Target:  5'- gGGGCgaguGGCGGGCGgGGgagGGCCCgggcCGCu -3'
miRNA:   3'- -UCCG----UCGCCCGCgCCg--CUGGGa---GCGu -5'
23580 3' -65.7 NC_005261.1 + 16052 0.73 0.168391
Target:  5'- uGGGCAGCGGGCccGCGcCGAgCCggCGCGu -3'
miRNA:   3'- -UCCGUCGCCCG--CGCcGCUgGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 16095 0.66 0.44533
Target:  5'- -cGCGGCGGcaccgGCGGCGGCCa-CGCAc -3'
miRNA:   3'- ucCGUCGCCcg---CGCCGCUGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 16152 0.69 0.274628
Target:  5'- uGGCugcgcGCGGGCGUGcGCGACCCg---- -3'
miRNA:   3'- uCCGu----CGCCCGCGC-CGCUGGGagcgu -5'
23580 3' -65.7 NC_005261.1 + 16175 0.67 0.36326
Target:  5'- gGGGC-GCGGGCGUGGCGggggugggcggggGCCg-CGUg -3'
miRNA:   3'- -UCCGuCGCCCGCGCCGC-------------UGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 16294 0.69 0.287151
Target:  5'- gGGGCGccGuCGGGCccaGCGGCGGccgggcccuccCCCUCGCc -3'
miRNA:   3'- -UCCGU--C-GCCCG---CGCCGCU-----------GGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 16818 0.66 0.428253
Target:  5'- -cGUAGCGGcG-GCGGCaGCCgUCGCAc -3'
miRNA:   3'- ucCGUCGCC-CgCGCCGcUGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 17129 0.66 0.46278
Target:  5'- cGGCGGCGGGUacGcCGGCGGgUCgaCGUAg -3'
miRNA:   3'- uCCGUCGCCCG--C-GCCGCUgGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 17171 0.71 0.208533
Target:  5'- cGGC-GCGGGCGUgGGCaGCCCUgcCGCGg -3'
miRNA:   3'- uCCGuCGCCCGCG-CCGcUGGGA--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 17472 0.66 0.454009
Target:  5'- cGGGCAgacGCGGGCGCGcCGGggggUCCUagaCGCGg -3'
miRNA:   3'- -UCCGU---CGCCCGCGCcGCU----GGGA---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 17546 0.69 0.30677
Target:  5'- uGGGCGgcGCGGGCccgccguucgGCGGUGGCC-UUGCGg -3'
miRNA:   3'- -UCCGU--CGCCCG----------CGCCGCUGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 17855 0.71 0.203694
Target:  5'- cGGUGcGCgaGGGCGCGGCG-CCgUCGCGc -3'
miRNA:   3'- uCCGU-CG--CCCGCGCCGCuGGgAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.