miRNA display CGI


Results 81 - 100 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 38151 0.75 0.116691
Target:  5'- cGGCGGCgagGGGCGCGGCGcGCCCcCGg- -3'
miRNA:   3'- uCCGUCG---CCCGCGCCGC-UGGGaGCgu -5'
23580 3' -65.7 NC_005261.1 + 107154 0.75 0.116691
Target:  5'- gGGGCccagcacgcgGGCGGGCaGCGGCGGCUCcCGCc -3'
miRNA:   3'- -UCCG----------UCGCCCG-CGCCGCUGGGaGCGu -5'
23580 3' -65.7 NC_005261.1 + 125710 0.75 0.119619
Target:  5'- cGGCGGC-GGCGCGG-GGCCCcgCGCGg -3'
miRNA:   3'- uCCGUCGcCCGCGCCgCUGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 60717 0.75 0.119619
Target:  5'- gGGGCGG-GGGCGCGGCGGCgaUgGCGg -3'
miRNA:   3'- -UCCGUCgCCCGCGCCGCUGggAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 92813 0.75 0.122616
Target:  5'- cGGCGGCGGGCGCaGGCG-CCgcaGCAg -3'
miRNA:   3'- uCCGUCGCCCGCG-CCGCuGGgagCGU- -5'
23580 3' -65.7 NC_005261.1 + 60427 0.74 0.125682
Target:  5'- cGGCAGCucGGCG-GGCGcGCCCUCGCc -3'
miRNA:   3'- uCCGUCGc-CCGCgCCGC-UGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 116440 0.74 0.125682
Target:  5'- cGGcCGGCGGcUGCGGCGGCCCgcgcCGCGg -3'
miRNA:   3'- uCC-GUCGCCcGCGCCGCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 125235 0.75 0.110758
Target:  5'- cGGGCucGCGGGCcuaaucgGCGucGCGGCCCUCGCu -3'
miRNA:   3'- -UCCGu-CGCCCG-------CGC--CGCUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 95959 0.75 0.108303
Target:  5'- cGGCGGCugcuGGGCGCGGCcg-CCUCGCGc -3'
miRNA:   3'- uCCGUCG----CCCGCGCCGcugGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 100688 0.75 0.108303
Target:  5'- cGGCGGCGGGaGCGGCGcgcggaCCUCGUg -3'
miRNA:   3'- uCCGUCGCCCgCGCCGCug----GGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 127261 0.76 0.090883
Target:  5'- cGGGC-GCgGGGCgGCGGCGGCCCaCGCGu -3'
miRNA:   3'- -UCCGuCG-CCCG-CGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35995 0.76 0.093198
Target:  5'- -cGCAGCGGGCGaCGGCGGCCaucgaggccgugCUUGCGu -3'
miRNA:   3'- ucCGUCGCCCGC-GCCGCUGG------------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 20495 0.76 0.097997
Target:  5'- gGGGCGGCGGcGCcaGCGcGCGGCCgCUUGCGg -3'
miRNA:   3'- -UCCGUCGCC-CG--CGC-CGCUGG-GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135986 0.76 0.100232
Target:  5'- cGGCGGCcugaguggccgccGGuGCGCGGCgGGCUCUCGCAc -3'
miRNA:   3'- uCCGUCG-------------CC-CGCGCCG-CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 27536 0.76 0.100483
Target:  5'- cGGCcacGUGGGCGCGGaaGCCCUCGUg -3'
miRNA:   3'- uCCGu--CGCCCGCGCCgcUGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 6671 0.76 0.103029
Target:  5'- gGGGCAGcCGGGCGaCGGCGACCgccacguucugCUCGa- -3'
miRNA:   3'- -UCCGUC-GCCCGC-GCCGCUGG-----------GAGCgu -5'
23580 3' -65.7 NC_005261.1 + 70039 0.76 0.103029
Target:  5'- cGGCGGCGGGgGCgaGGgGGCCCgcggCGCGc -3'
miRNA:   3'- uCCGUCGCCCgCG--CCgCUGGGa---GCGU- -5'
23580 3' -65.7 NC_005261.1 + 11775 0.76 0.103029
Target:  5'- gAGGCgAGCGcgcuGGCGCGGCuGGCCUUUGCGc -3'
miRNA:   3'- -UCCG-UCGC----CCGCGCCG-CUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 38326 0.75 0.105635
Target:  5'- gAGGCGcucGCGGGCcggGUGGCGgucaacGCCCUCGCGc -3'
miRNA:   3'- -UCCGU---CGCCCG---CGCCGC------UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 39476 0.74 0.128819
Target:  5'- cGGCAGCGGcaaccGCGCGGCcaacGCCCgCGCGg -3'
miRNA:   3'- uCCGUCGCC-----CGCGCCGc---UGGGaGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.