miRNA display CGI


Results 61 - 80 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 5123 0.66 0.436743
Target:  5'- cGGC-GCGGGCGgccCGcCGGCgCUCGCGc -3'
miRNA:   3'- uCCGuCGCCCGC---GCcGCUGgGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 107528 0.66 0.428253
Target:  5'- aGGGCAGC--GCGuCGGCGGCCaccaGCAc -3'
miRNA:   3'- -UCCGUCGccCGC-GCCGCUGGgag-CGU- -5'
23580 3' -65.7 NC_005261.1 + 1592 0.66 0.46278
Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3'
miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 133388 0.66 0.460139
Target:  5'- cGGCccaCGGGCGC-GCGGCCCaaaacaaggcccgcUCGCu -3'
miRNA:   3'- uCCGuc-GCCCGCGcCGCUGGG--------------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 43299 0.66 0.454009
Target:  5'- -cGCGGgGGGCGcCGGCaGCCCggccagcuUCGCc -3'
miRNA:   3'- ucCGUCgCCCGC-GCCGcUGGG--------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 59582 0.66 0.454009
Target:  5'- -cGCAGCGGGUGCcGCGccgccaccACCUcCGCGg -3'
miRNA:   3'- ucCGUCGCCCGCGcCGC--------UGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 97371 0.66 0.453137
Target:  5'- cGGCc-CGGGCGUGucgccgcGCGGCUUUCGCGc -3'
miRNA:   3'- uCCGucGCCCGCGC-------CGCUGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 75470 0.66 0.44533
Target:  5'- cAGGCGcCGGGCgGCGGCGcggGCCgCUacgaGCGc -3'
miRNA:   3'- -UCCGUcGCCCG-CGCCGC---UGG-GAg---CGU- -5'
23580 3' -65.7 NC_005261.1 + 47621 0.66 0.44533
Target:  5'- cGGgGGCGGcCGCGGCcGCCgCgCGCAc -3'
miRNA:   3'- uCCgUCGCCcGCGCCGcUGG-GaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 81194 0.66 0.444467
Target:  5'- gGGGCAcggccgcGCGGGCGCGaGCcgGACCaccguggCGCc -3'
miRNA:   3'- -UCCGU-------CGCCCGCGC-CG--CUGGga-----GCGu -5'
23580 3' -65.7 NC_005261.1 + 3432 0.67 0.387314
Target:  5'- cGGGCcagcguccaGGCGGGCGC-GCGGgCCgccgCGCc -3'
miRNA:   3'- -UCCG---------UCGCCCGCGcCGCUgGGa---GCGu -5'
23580 3' -65.7 NC_005261.1 + 98111 0.67 0.390494
Target:  5'- cGGGCGGCGaGGCuGgggacgccgcggcacCGGCGGCCgUCgGCGg -3'
miRNA:   3'- -UCCGUCGC-CCG-C---------------GCCGCUGGgAG-CGU- -5'
23580 3' -65.7 NC_005261.1 + 71220 0.66 0.428253
Target:  5'- -uGguGCGcGCGCGcacGCGGCCCUCgGCGg -3'
miRNA:   3'- ucCguCGCcCGCGC---CGCUGGGAG-CGU- -5'
23580 3' -65.7 NC_005261.1 + 83053 0.66 0.423206
Target:  5'- cGGgAGgGGGCucccugcgcgcccccGCGGCGGCCggCGCu -3'
miRNA:   3'- uCCgUCgCCCG---------------CGCCGCUGGgaGCGu -5'
23580 3' -65.7 NC_005261.1 + 28124 0.66 0.419861
Target:  5'- gGGGCcucgaGGCGGGCGCccucGGCGcCCCcaucucCGCc -3'
miRNA:   3'- -UCCG-----UCGCCCGCG----CCGCuGGGa-----GCGu -5'
23580 3' -65.7 NC_005261.1 + 20187 0.66 0.411569
Target:  5'- aAGGCAGCaGGCGaaGCGgggccgccaaagGCCC-CGCGc -3'
miRNA:   3'- -UCCGUCGcCCGCgcCGC------------UGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 48429 0.67 0.40338
Target:  5'- cAGGCGguacagcucGCGGuGCGUGGCGcgGCCggCGCGg -3'
miRNA:   3'- -UCCGU---------CGCC-CGCGCCGC--UGGgaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 67058 0.67 0.40338
Target:  5'- uGuaGGCGGGCGCGcGCGGgggCUCGCu -3'
miRNA:   3'- uCcgUCGCCCGCGC-CGCUgg-GAGCGu -5'
23580 3' -65.7 NC_005261.1 + 39796 0.67 0.395295
Target:  5'- gGGGCGGCGcGGcCGcCGGCGccagGCUCUgGCc -3'
miRNA:   3'- -UCCGUCGC-CC-GC-GCCGC----UGGGAgCGu -5'
23580 3' -65.7 NC_005261.1 + 68995 0.67 0.395295
Target:  5'- cGGGCcgcGCGGGCGCcGCGG-CUUCGUu -3'
miRNA:   3'- -UCCGu--CGCCCGCGcCGCUgGGAGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.