miRNA display CGI


Results 81 - 100 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 30948 0.66 0.427409
Target:  5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3'
miRNA:   3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 29811 0.66 0.419861
Target:  5'- cGGCGgcGCGGGCGCccGCGccGCgCUCGCc -3'
miRNA:   3'- uCCGU--CGCCCGCGc-CGC--UGgGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 137965 0.66 0.411569
Target:  5'- nGGCGGCGGcUGCGGCGGCggcUGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 62702 0.66 0.409102
Target:  5'- cGGC-GCa-GCGUGGCGaggaacaccaccuuGCCCUCGCAc -3'
miRNA:   3'- uCCGuCGccCGCGCCGC--------------UGGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 19054 0.67 0.40338
Target:  5'- cAGGCAGggguaCGGGCuGC-GCGGCUCUCGg- -3'
miRNA:   3'- -UCCGUC-----GCCCG-CGcCGCUGGGAGCgu -5'
23580 3' -65.7 NC_005261.1 + 39796 0.67 0.395295
Target:  5'- gGGGCGGCGcGGcCGcCGGCGccagGCUCUgGCc -3'
miRNA:   3'- -UCCGUCGC-CC-GC-GCCGC----UGGGAgCGu -5'
23580 3' -65.7 NC_005261.1 + 68995 0.67 0.395295
Target:  5'- cGGGCcgcGCGGGCGCcGCGG-CUUCGUu -3'
miRNA:   3'- -UCCGu--CGCCCGCGcCGCUgGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 81194 0.66 0.444467
Target:  5'- gGGGCAcggccgcGCGGGCGCGaGCcgGACCaccguggCGCc -3'
miRNA:   3'- -UCCGU-------CGCCCGCGC-CG--CUGGga-----GCGu -5'
23580 3' -65.7 NC_005261.1 + 47621 0.66 0.44533
Target:  5'- cGGgGGCGGcCGCGGCcGCCgCgCGCAc -3'
miRNA:   3'- uCCgUCGCCcGCGCCGcUGG-GaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 75470 0.66 0.44533
Target:  5'- cAGGCGcCGGGCgGCGGCGcggGCCgCUacgaGCGc -3'
miRNA:   3'- -UCCGUcGCCCG-CGCCGC---UGG-GAg---CGU- -5'
23580 3' -65.7 NC_005261.1 + 63363 0.67 0.387314
Target:  5'- cGGUGGCGcGGUGCgGGUGugCCgggUCGCc -3'
miRNA:   3'- uCCGUCGC-CCGCG-CCGCugGG---AGCGu -5'
23580 3' -65.7 NC_005261.1 + 74760 0.67 0.37866
Target:  5'- nGGCAGCGcgccacaGGCGCGGagguCGACgCgCGCAu -3'
miRNA:   3'- uCCGUCGC-------CCGCGCC----GCUGgGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 38371 0.67 0.371676
Target:  5'- gGGGCGGcCGGGaaGCGGCa--CCUCGUg -3'
miRNA:   3'- -UCCGUC-GCCCg-CGCCGcugGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 56135 0.67 0.371676
Target:  5'- aGGGCGGgGGGCGCgggccgaggguGGCGGCagcggcggggCC-CGCGg -3'
miRNA:   3'- -UCCGUCgCCCGCG-----------CCGCUG----------GGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 110819 0.67 0.369367
Target:  5'- gGGGCGGaCGGGgcCGCGGaCGaguuuccgcugcccGCCCUgGCGa -3'
miRNA:   3'- -UCCGUC-GCCC--GCGCC-GC--------------UGGGAgCGU- -5'
23580 3' -65.7 NC_005261.1 + 1592 0.66 0.46278
Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3'
miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 133388 0.66 0.460139
Target:  5'- cGGCccaCGGGCGC-GCGGCCCaaaacaaggcccgcUCGCu -3'
miRNA:   3'- uCCGuc-GCCCGCGcCGCUGGG--------------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 43299 0.66 0.454009
Target:  5'- -cGCGGgGGGCGcCGGCaGCCCggccagcuUCGCc -3'
miRNA:   3'- ucCGUCgCCCGC-GCCGcUGGG--------AGCGu -5'
23580 3' -65.7 NC_005261.1 + 59582 0.66 0.454009
Target:  5'- -cGCAGCGGGUGCcGCGccgccaccACCUcCGCGg -3'
miRNA:   3'- ucCGUCGCCCGCGcCGC--------UGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 97371 0.66 0.453137
Target:  5'- cGGCc-CGGGCGUGucgccgcGCGGCUUUCGCGc -3'
miRNA:   3'- uCCGucGCCCGCGC-------CGCUGGGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.