miRNA display CGI

Results 101 - 120 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	72506	0.67	0.371676
	Target:  5'- -cGCgaAGCGGGCGCcgcauccuccuuGGCGGCUCgcugCGCGg -3' miRNA:   3'- ucCG--UCGCCCGCG------------CCGCUGGGa---GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	105377	0.67	0.36402
	Target:  5'- cGGCGcgcGCGGGUGCGcGCuGACCacgCGCc -3' miRNA:   3'- uCCGU---CGCCCGCGC-CG-CUGGga-GCGu -5'
23580	3'	-65.7	NC_005261.1	+	65821	0.67	0.36402
	Target:  5'- cGGGCGGCGGcGCGaaGCuGCCCgagugcCGCGa -3' miRNA:   3'- -UCCGUCGCC-CGCgcCGcUGGGa-----GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	107267	0.67	0.36402
	Target:  5'- cGGGCacgGGCGGGCGCgcaucaGGCGGCaggcaCUcCGCc -3' miRNA:   3'- -UCCG---UCGCCCGCG------CCGCUGg----GA-GCGu -5'
23580	3'	-65.7	NC_005261.1	+	100744	0.67	0.361744
	Target:  5'- -cGCGGCGGcGCGCGGC-ACgagcuugaaguaggCCUCGUAg -3' miRNA:   3'- ucCGUCGCC-CGCGCCGcUG--------------GGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	62702	0.66	0.409102
	Target:  5'- cGGC-GCa-GCGUGGCGaggaacaccaccuuGCCCUCGCAc -3' miRNA:   3'- uCCGuCGccCGCGCCGC--------------UGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	137965	0.66	0.411569
	Target:  5'- nGGCGGCGGcUGCGGCGGCggcUGCGg -3' miRNA:   3'- uCCGUCGCCcGCGCCGCUGggaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	1592	0.66	0.46278
	Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3' miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	133388	0.66	0.460139
	Target:  5'- cGGCccaCGGGCGC-GCGGCCCaaaacaaggcccgcUCGCu -3' miRNA:   3'- uCCGuc-GCCCGCGcCGCUGGG--------------AGCGu -5'
23580	3'	-65.7	NC_005261.1	+	43299	0.66	0.454009
	Target:  5'- -cGCGGgGGGCGcCGGCaGCCCggccagcuUCGCc -3' miRNA:   3'- ucCGUCgCCCGC-GCCGcUGGG--------AGCGu -5'
23580	3'	-65.7	NC_005261.1	+	59582	0.66	0.454009
	Target:  5'- -cGCAGCGGGUGCcGCGccgccaccACCUcCGCGg -3' miRNA:   3'- ucCGUCGCCCGCGcCGC--------UGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	97371	0.66	0.453137
	Target:  5'- cGGCc-CGGGCGUGucgccgcGCGGCUUUCGCGc -3' miRNA:   3'- uCCGucGCCCGCGC-------CGCUGGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	75470	0.66	0.44533
	Target:  5'- cAGGCGcCGGGCgGCGGCGcggGCCgCUacgaGCGc -3' miRNA:   3'- -UCCGUcGCCCG-CGCCGC---UGG-GAg---CGU- -5'
23580	3'	-65.7	NC_005261.1	+	47621	0.66	0.44533
	Target:  5'- cGGgGGCGGcCGCGGCcGCCgCgCGCAc -3' miRNA:   3'- uCCgUCGCCcGCGCCGcUGG-GaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	81194	0.66	0.444467
	Target:  5'- gGGGCAcggccgcGCGGGCGCGaGCcgGACCaccguggCGCc -3' miRNA:   3'- -UCCGU-------CGCCCGCGC-CG--CUGGga-----GCGu -5'
23580	3'	-65.7	NC_005261.1	+	56008	0.66	0.43589
	Target:  5'- cGGgGGCGGGgGCGGgGaagacgcaaucgcGCCCgugacgCGCGc -3' miRNA:   3'- uCCgUCGCCCgCGCCgC-------------UGGGa-----GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	134565	0.66	0.428253
	Target:  5'- uGGGCGGCGccgcggcuGCGCagGGCGGgCCUgGCGa -3' miRNA:   3'- -UCCGUCGCc-------CGCG--CCGCUgGGAgCGU- -5'
23580	3'	-65.7	NC_005261.1	+	71622	0.66	0.428253
	Target:  5'- cGGGC-GCGGGCccggGCGGCGggaaaacgccGCCCcCGUu -3' miRNA:   3'- -UCCGuCGCCCG----CGCCGC----------UGGGaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	30948	0.66	0.427409
	Target:  5'- cGGgGGCGGGCcucgaggcccgccGCGaCGGCCCgccgcggCGCAa -3' miRNA:   3'- uCCgUCGCCCG-------------CGCcGCUGGGa------GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	29811	0.66	0.419861
	Target:  5'- cGGCGgcGCGGGCGCccGCGccGCgCUCGCc -3' miRNA:   3'- uCCGU--CGCCCGCGc-CGC--UGgGAGCGu -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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