miRNA display CGI

Results 41 - 60 of 733 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23580	3'	-65.7	NC_005261.1	+	65355	0.66	0.44533
	Target:  5'- cGGCGGCGGG-GCGG--ACCUgccCGCGg -3' miRNA:   3'- uCCGUCGCCCgCGCCgcUGGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	3364	0.66	0.457507
	Target:  5'- gGGGCccgcGgGGGCGCgGGCGccuuguccccguccUCCUCGCAg -3' miRNA:   3'- -UCCGu---CgCCCGCG-CCGCu-------------GGGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	31477	0.66	0.419861
	Target:  5'- cGGCaagcucguGGCGGGCGCGGaGGCgCCggggcUGCAc -3' miRNA:   3'- uCCG--------UCGCCCGCGCCgCUG-GGa----GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	12167	0.66	0.454009
	Target:  5'- gAGGcCGGCGGGCGgcUGGCG-CCggagcgggagcaCUCGUAc -3' miRNA:   3'- -UCC-GUCGCCCGC--GCCGCuGG------------GAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	127506	0.66	0.454009
	Target:  5'- gAGGCGGCggaggaagagGGGgGCccggaGGCGGCCCgcgaaCGCc -3' miRNA:   3'- -UCCGUCG----------CCCgCG-----CCGCUGGGa----GCGu -5'
23580	3'	-65.7	NC_005261.1	+	53329	0.66	0.411569
	Target:  5'- cGGaGguGUGGGCG-GGC-ACCUUCGCc -3' miRNA:   3'- -UC-CguCGCCCGCgCCGcUGGGAGCGu -5'
23580	3'	-65.7	NC_005261.1	+	51208	0.66	0.411569
	Target:  5'- -cGCGGUGGcGCGCGG-GGCCg-CGCAc -3' miRNA:   3'- ucCGUCGCC-CGCGCCgCUGGgaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	58361	0.66	0.440166
	Target:  5'- uGGGCcgaGGCGGccaagcucaaccccaGCGCGGCGGCUagCGCu -3' miRNA:   3'- -UCCG---UCGCC---------------CGCGCCGCUGGgaGCGu -5'
23580	3'	-65.7	NC_005261.1	+	36342	0.66	0.428253
	Target:  5'- gAGG-AGCGcGCGCGGCugggcGCCCUgCGCGc -3' miRNA:   3'- -UCCgUCGCcCGCGCCGc----UGGGA-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	38181	0.66	0.436743
	Target:  5'- cGGCGGCGGcGCGCucgaGCuGACgCC-CGCGg -3' miRNA:   3'- uCCGUCGCC-CGCGc---CG-CUG-GGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	125496	0.66	0.411569
	Target:  5'- cGGGCccgcccAGgGGGC-CGGCgGGCCCgCGCGc -3' miRNA:   3'- -UCCG------UCgCCCGcGCCG-CUGGGaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	132642	0.66	0.419861
	Target:  5'- gGGGCcucgaGGCGGGCGCccucGGCGcCCCcaucucCGCc -3' miRNA:   3'- -UCCG-----UCGCCCGCG----CCGCuGGGa-----GCGu -5'
23580	3'	-65.7	NC_005261.1	+	32255	0.66	0.416532
	Target:  5'- cGGGCGGCgucgacgccgcgcuGGGCGCcgaggccaucgacGGCG-CgCUCGCGg -3' miRNA:   3'- -UCCGUCG--------------CCCGCG-------------CCGCuGgGAGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	49747	0.66	0.436743
	Target:  5'- gAGcGCGGCGcgcuccGGCGCGGCacGGCCCgcccacaCGCu -3' miRNA:   3'- -UC-CGUCGC------CCGCGCCG--CUGGGa------GCGu -5'
23580	3'	-65.7	NC_005261.1	+	134488	0.66	0.44533
	Target:  5'- gAGGCGGCGcGGUGCGcCG-CCggCGCGu -3' miRNA:   3'- -UCCGUCGC-CCGCGCcGCuGGgaGCGU- -5'
23580	3'	-65.7	NC_005261.1	+	14310	0.66	0.411569
	Target:  5'- cGGGCGcGCaccugcucGGGCcgcaccccacaGCGGCGGCCUUcCGCGa -3' miRNA:   3'- -UCCGU-CG--------CCCG-----------CGCCGCUGGGA-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	55852	0.66	0.419861
	Target:  5'- nGGGCuGgGcGGCGCuGGCGGCgCgcgCGCGc -3' miRNA:   3'- -UCCGuCgC-CCGCG-CCGCUGgGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	133097	0.66	0.454009
	Target:  5'- gAGGCGcGCGaGCGcCGGCGGgCCgccCGCGc -3' miRNA:   3'- -UCCGU-CGCcCGC-GCCGCUgGGa--GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	37158	0.66	0.411569
	Target:  5'- cGGCcGCGGGCGUGGUgcuggGGCUgcgCGCGg -3' miRNA:   3'- uCCGuCGCCCGCGCCG-----CUGGga-GCGU- -5'
23580	3'	-65.7	NC_005261.1	+	106109	0.66	0.46278
	Target:  5'- cGGuUGGC-GGCGCGGUGGCuggccgCCUCGCc -3' miRNA:   3'- uCC-GUCGcCCGCGCCGCUG------GGAGCGu -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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