miRNA display CGI


Results 41 - 60 of 733 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 3' -65.7 NC_005261.1 + 104847 0.78 0.063712
Target:  5'- cGGCGGCGGcUGCGGCGGCCCgcagcccggCGCGg -3'
miRNA:   3'- uCCGUCGCCcGCGCCGCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 38399 0.78 0.067049
Target:  5'- uGGGCGGCGGG-GCGGaCGACCCggcggacggCGCGc -3'
miRNA:   3'- -UCCGUCGCCCgCGCC-GCUGGGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 65521 0.78 0.067049
Target:  5'- gGGGCGGCGGGCGCgacgcuGGCGgACCUggCGCGc -3'
miRNA:   3'- -UCCGUCGCCCGCG------CCGC-UGGGa-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 105933 0.78 0.06878
Target:  5'- cGGCGGCGGGgGCGGCG-CCCgccuccaGCAc -3'
miRNA:   3'- uCCGUCGCCCgCGCCGCuGGGag-----CGU- -5'
23580 3' -65.7 NC_005261.1 + 8103 0.78 0.06878
Target:  5'- cGGCGGaCGGcGCGCGGCGGCUCgccaaggCGCAg -3'
miRNA:   3'- uCCGUC-GCC-CGCGCCGCUGGGa------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 134764 0.78 0.070555
Target:  5'- uGGCGcgguacucgacGCGcGGCGCGGCGGCCCgCGCGc -3'
miRNA:   3'- uCCGU-----------CGC-CCGCGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 88175 0.78 0.072373
Target:  5'- cGGCAGCGGGCuucucgcgGCGGCGcugcACCgUCGCGc -3'
miRNA:   3'- uCCGUCGCCCG--------CGCCGC----UGGgAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 42497 0.78 0.072373
Target:  5'- cGGCGGCGGcgccgcugaGCGCGGCgGGCCCgagCGCGa -3'
miRNA:   3'- uCCGUCGCC---------CGCGCCG-CUGGGa--GCGU- -5'
23580 3' -65.7 NC_005261.1 + 11708 0.78 0.074236
Target:  5'- aGGcGCGGCGGGCGCgGGCG-CCCagGCAg -3'
miRNA:   3'- -UC-CGUCGCCCGCG-CCGCuGGGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 26600 0.78 0.074236
Target:  5'- cGGCGGCGGGCgGCGGCGGCacggCGCc -3'
miRNA:   3'- uCCGUCGCCCG-CGCCGCUGgga-GCGu -5'
23580 3' -65.7 NC_005261.1 + 34776 0.77 0.078101
Target:  5'- uGGCGaCGGGCGCGGCGGCCgacCGCGa -3'
miRNA:   3'- uCCGUcGCCCGCGCCGCUGGga-GCGU- -5'
23580 3' -65.7 NC_005261.1 + 107356 0.77 0.080105
Target:  5'- cGGGCGGCaGGGC-CGGCGGCCCccUCGUc -3'
miRNA:   3'- -UCCGUCG-CCCGcGCCGCUGGG--AGCGu -5'
23580 3' -65.7 NC_005261.1 + 34425 0.77 0.088623
Target:  5'- uGGCGGCGGGCGCaacGGCGcacaccgaagacGgCCUCGCGg -3'
miRNA:   3'- uCCGUCGCCCGCG---CCGC------------UgGGAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 46748 0.77 0.088623
Target:  5'- cGGGCGGCGGcCGCGGCGGCgCCgcugggaggCGCGg -3'
miRNA:   3'- -UCCGUCGCCcGCGCCGCUG-GGa--------GCGU- -5'
23580 3' -65.7 NC_005261.1 + 69699 0.76 0.090883
Target:  5'- gGGGCGcGCGGGCGcCGGCGGCgCCg-GCAg -3'
miRNA:   3'- -UCCGU-CGCCCGC-GCCGCUG-GGagCGU- -5'
23580 3' -65.7 NC_005261.1 + 78860 0.76 0.090883
Target:  5'- uGGC-GCGGGCGCuGGCGggcgacACCCUCGUg -3'
miRNA:   3'- uCCGuCGCCCGCG-CCGC------UGGGAGCGu -5'
23580 3' -65.7 NC_005261.1 + 108068 0.76 0.090883
Target:  5'- cAGcGCGGCGGGCGCGGCG-CCgCUaaggCGCGc -3'
miRNA:   3'- -UC-CGUCGCCCGCGCCGCuGG-GA----GCGU- -5'
23580 3' -65.7 NC_005261.1 + 127261 0.76 0.090883
Target:  5'- cGGGC-GCgGGGCgGCGGCGGCCCaCGCGu -3'
miRNA:   3'- -UCCGuCG-CCCG-CGCCGCUGGGaGCGU- -5'
23580 3' -65.7 NC_005261.1 + 35995 0.76 0.093198
Target:  5'- -cGCAGCGGGCGaCGGCGGCCaucgaggccgugCUUGCGu -3'
miRNA:   3'- ucCGUCGCCCGC-GCCGCUGG------------GAGCGU- -5'
23580 3' -65.7 NC_005261.1 + 135986 0.76 0.100232
Target:  5'- cGGCGGCcugaguggccgccGGuGCGCGGCgGGCUCUCGCAc -3'
miRNA:   3'- uCCGUCG-------------CC-CGCGCCG-CUGGGAGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.