miRNA display CGI


Results 41 - 60 of 91 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 71422 0.68 0.748774
Target:  5'- --cGCGGGGCCcg--GCCCGGGCc-- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 131771 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 27254 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 72051 0.68 0.748774
Target:  5'- ----gGAGGCgGAcGUGCCUGuGACGUAc -3'
miRNA:   3'- aaaugCUCCGgCU-CACGGGC-CUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 135039 0.68 0.748774
Target:  5'- --gGCGAGGCCGAc-GCCUGcGGCGg- -3'
miRNA:   3'- aaaUGCUCCGGCUcaCGGGC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 16956 0.68 0.757602
Target:  5'- --aGCGAGGCCGGGcgGCCgccccgucugcggCGGACc-- -3'
miRNA:   3'- aaaUGCUCCGGCUCa-CGG-------------GCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 44964 0.68 0.758577
Target:  5'- -cUGCGGGacgcGCgCGAGgGCCCGGGCGg- -3'
miRNA:   3'- aaAUGCUC----CG-GCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 107462 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 2945 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 61743 0.67 0.768263
Target:  5'- --cGCGAGcGCCGAGgGCUCGGGg--- -3'
miRNA:   3'- aaaUGCUC-CGGCUCaCGGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 607 0.67 0.777822
Target:  5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3'
miRNA:   3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5'
23580 5' -56.4 NC_005261.1 + 105124 0.67 0.777822
Target:  5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3'
miRNA:   3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5'
23580 5' -56.4 NC_005261.1 + 34321 0.67 0.785372
Target:  5'- --gGgGAGGCCGAGgggccccaagggGCCgGGGCGg- -3'
miRNA:   3'- aaaUgCUCCGGCUCa-----------CGGgCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 44880 0.67 0.787246
Target:  5'- --cGCGAGcGCCGcGGggaugGCCgGGGCGUAc -3'
miRNA:   3'- aaaUGCUC-CGGC-UCa----CGGgCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 55796 0.67 0.787246
Target:  5'- --cGCGGGGCCGGccGgggGCgCGGACGg- -3'
miRNA:   3'- aaaUGCUCCGGCU--Ca--CGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 5505 0.67 0.790975
Target:  5'- -gUGCGGGGCCGccggcaaugagguagGGcGCCgGGACGg- -3'
miRNA:   3'- aaAUGCUCCGGC---------------UCaCGGgCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 63598 0.67 0.796524
Target:  5'- --cGCGGGGCCcuGUGgCCGGAUg-- -3'
miRNA:   3'- aaaUGCUCCGGcuCACgGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 39584 0.67 0.796524
Target:  5'- -cUGgGGGGCCGAggaGUGgCUGGACGa- -3'
miRNA:   3'- aaAUgCUCCGGCU---CACgGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 26956 0.67 0.796524
Target:  5'- --gGCGcGGGCCGGGUGCUCGcucucagcGGCAg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCACGGGC--------CUGUau -5'
23580 5' -56.4 NC_005261.1 + 34699 0.67 0.796524
Target:  5'- ----gGGGGCCGAGgaggcggcggaUGCCgCGGACGc- -3'
miRNA:   3'- aaaugCUCCGGCUC-----------ACGG-GCCUGUau -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.