miRNA display CGI


Results 41 - 60 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 607 0.67 0.777822
Target:  5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3'
miRNA:   3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5'
23580 5' -56.4 NC_005261.1 + 2945 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 107462 0.67 0.768263
Target:  5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3'
miRNA:   3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 61743 0.67 0.768263
Target:  5'- --cGCGAGcGCCGAGgGCUCGGGg--- -3'
miRNA:   3'- aaaUGCUC-CGGCUCaCGGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 44964 0.68 0.758577
Target:  5'- -cUGCGGGacgcGCgCGAGgGCCCGGGCGg- -3'
miRNA:   3'- aaAUGCUC----CG-GCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 16956 0.68 0.757602
Target:  5'- --aGCGAGGCCGGGcgGCCgccccgucugcggCGGACc-- -3'
miRNA:   3'- aaaUGCUCCGGCUCa-CGG-------------GCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 27254 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 135039 0.68 0.748774
Target:  5'- --gGCGAGGCCGAc-GCCUGcGGCGg- -3'
miRNA:   3'- aaaUGCUCCGGCUcaCGGGC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 131771 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 72051 0.68 0.748774
Target:  5'- ----gGAGGCgGAcGUGCCUGuGACGUAc -3'
miRNA:   3'- aaaugCUCCGgCU-CACGGGC-CUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 71422 0.68 0.748774
Target:  5'- --cGCGGGGCCcg--GCCCGGGCc-- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 48301 0.68 0.738865
Target:  5'- --aGCGAGGCCucGGGgggcgcgucggGCCCGGGCu-- -3'
miRNA:   3'- aaaUGCUCCGG--CUCa----------CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 15721 0.68 0.728859
Target:  5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3'
miRNA:   3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 127485 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 22967 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 6023 0.68 0.728859
Target:  5'- --cGCGuGGCgCGGGcggGCCCGGACc-- -3'
miRNA:   3'- aaaUGCuCCG-GCUCa--CGGGCCUGuau -5'
23580 5' -56.4 NC_005261.1 + 103087 0.68 0.718765
Target:  5'- --cGCGaAGGCCGGGcccaGCCCGGcCAg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCa---CGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 31556 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 136073 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 51464 0.68 0.708595
Target:  5'- --gACGAGGaCGucacGUGCCUGGACGa- -3'
miRNA:   3'- aaaUGCUCCgGCu---CACGGGCCUGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.