Results 81 - 91 of 91 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 124455 | 0.76 | 0.312025 |
|
Target: 5'- ---cCGGGGCCGGGUGCCCucagGGGCGc- -3' miRNA: 3'- aaauGCUCCGGCUCACGGG----CCUGUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 125719 | 0.66 | 0.823394 |
|
Target: 5'- --cGCGGGGCCccgcgcGGUcGCCCGGgggGCAUGg -3' miRNA: 3'- aaaUGCUCCGGc-----UCA-CGGGCC---UGUAU- -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 127485 | 0.68 | 0.728859 |
|
Target: 5'- --gACGAGGCCGAGga-CCGGGa--- -3' miRNA: 3'- aaaUGCUCCGGCUCacgGGCCUguau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 127998 | 0.66 | 0.856648 |
|
Target: 5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3' miRNA: 3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 128882 | 0.67 | 0.796524 |
|
Target: 5'- --gACGAGGCgGGG-GCCgGGugGg- -3' miRNA: 3'- aaaUGCUCCGgCUCaCGGgCCugUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 129699 | 0.66 | 0.840415 |
|
Target: 5'- ---cCGGGGCCGGG-GCCgGaGGCAg- -3' miRNA: 3'- aaauGCUCCGGCUCaCGGgC-CUGUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 131771 | 0.68 | 0.748774 |
|
Target: 5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3' miRNA: 3'- aaauGCUCCGgCUCACGgGCCUGUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 133816 | 0.66 | 0.840415 |
|
Target: 5'- --gGCGAGGCCug--GCCCGG-CAg- -3' miRNA: 3'- aaaUGCUCCGGcucaCGGGCCuGUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 135000 | 0.66 | 0.848634 |
|
Target: 5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3' miRNA: 3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 135039 | 0.68 | 0.748774 |
|
Target: 5'- --gGCGAGGCCGAc-GCCUGcGGCGg- -3' miRNA: 3'- aaaUGCUCCGGCUcaCGGGC-CUGUau -5' |
|||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 136073 | 0.68 | 0.718765 |
|
Target: 5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3' miRNA: 3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home