miRNA display CGI


Results 61 - 80 of 91 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23580 5' -56.4 NC_005261.1 + 39728 0.66 0.839582
Target:  5'- gUUugGGGGgCGGGUGCCCcagucgcGGAUc-- -3'
miRNA:   3'- aAAugCUCCgGCUCACGGG-------CCUGuau -5'
23580 5' -56.4 NC_005261.1 + 39584 0.67 0.796524
Target:  5'- -cUGgGGGGCCGAggaGUGgCUGGACGa- -3'
miRNA:   3'- aaAUgCUCCGGCU---CACgGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 35305 0.66 0.848634
Target:  5'- --aGCGccGGGCCGGGcUGCUCGGGgAg- -3'
miRNA:   3'- aaaUGC--UCCGGCUC-ACGGGCCUgUau -5'
23580 5' -56.4 NC_005261.1 + 34699 0.67 0.796524
Target:  5'- ----gGGGGCCGAGgaggcggcggaUGCCgCGGACGc- -3'
miRNA:   3'- aaaugCUCCGGCUC-----------ACGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 34357 0.69 0.677716
Target:  5'- --gACGGGGCCGGGcGCCgCGcGGCGc- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGG-GC-CUGUau -5'
23580 5' -56.4 NC_005261.1 + 34321 0.67 0.785372
Target:  5'- --gGgGAGGCCGAGgggccccaagggGCCgGGGCGg- -3'
miRNA:   3'- aaaUgCUCCGGCUCa-----------CGGgCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 31670 0.69 0.698357
Target:  5'- ---cCGGGGCCGGcgcgcgccgGCCCGGACGc- -3'
miRNA:   3'- aaauGCUCCGGCUca-------CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 31556 0.68 0.718765
Target:  5'- --cACGccuGGGCCGGGUccuggacgggcGCgCCGGACGUGa -3'
miRNA:   3'- aaaUGC---UCCGGCUCA-----------CG-GGCCUGUAU- -5'
23580 5' -56.4 NC_005261.1 + 31275 0.69 0.656919
Target:  5'- ---cCGAGGCgGAGcgcGCCCGGGCcgAg -3'
miRNA:   3'- aaauGCUCCGgCUCa--CGGGCCUGuaU- -5'
23580 5' -56.4 NC_005261.1 + 30483 0.66 0.848634
Target:  5'- --gAgGAGGCCGGG-GCCuCGGAa--- -3'
miRNA:   3'- aaaUgCUCCGGCUCaCGG-GCCUguau -5'
23580 5' -56.4 NC_005261.1 + 30331 0.69 0.698357
Target:  5'- ---cCGAGGCCGcG-GCCgCGGACAa- -3'
miRNA:   3'- aaauGCUCCGGCuCaCGG-GCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 29299 0.66 0.840415
Target:  5'- --gGCGAGGCCug--GCCCGG-CAg- -3'
miRNA:   3'- aaaUGCUCCGGcucaCGGGCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 27254 0.68 0.748774
Target:  5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3'
miRNA:   3'- aaauGCUCCGgCUCACGgGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 26956 0.67 0.796524
Target:  5'- --gGCGcGGGCCGGGUGCUCGcucucagcGGCAg- -3'
miRNA:   3'- aaaUGC-UCCGGCUCACGGGC--------CUGUau -5'
23580 5' -56.4 NC_005261.1 + 24624 0.7 0.646485
Target:  5'- --aACuuGGCCagcGGGUGCCCGGGCGc- -3'
miRNA:   3'- aaaUGcuCCGG---CUCACGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 23481 0.66 0.856648
Target:  5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3'
miRNA:   3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5'
23580 5' -56.4 NC_005261.1 + 23232 0.69 0.698357
Target:  5'- --cGCGGGGCCGGG-GCCgCGG-CGg- -3'
miRNA:   3'- aaaUGCUCCGGCUCaCGG-GCCuGUau -5'
23580 5' -56.4 NC_005261.1 + 22967 0.68 0.728859
Target:  5'- --gACGAGGCCGAGga-CCGGGa--- -3'
miRNA:   3'- aaaUGCUCCGGCUCacgGGCCUguau -5'
23580 5' -56.4 NC_005261.1 + 19722 0.66 0.831999
Target:  5'- ---uCGAGGCCGAG-GCCCcGAUc-- -3'
miRNA:   3'- aaauGCUCCGGCUCaCGGGcCUGuau -5'
23580 5' -56.4 NC_005261.1 + 19359 0.69 0.677716
Target:  5'- --cGCGGuGGCCGAGgccaggGCCgCGGGCGc- -3'
miRNA:   3'- aaaUGCU-CCGGCUCa-----CGG-GCCUGUau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.