Results 81 - 91 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 16956 | 0.68 | 0.757602 |
Target: 5'- --aGCGAGGCCGGGcgGCCgccccgucugcggCGGACc-- -3' miRNA: 3'- aaaUGCUCCGGCUCa-CGG-------------GCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 15967 | 0.66 | 0.840415 |
Target: 5'- --gGCG-GGCgGGGgaggGCCCGGGCc-- -3' miRNA: 3'- aaaUGCuCCGgCUCa---CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 15931 | 0.8 | 0.181441 |
Target: 5'- ---cCGGGGCCGGG-GCCCGGGCAg- -3' miRNA: 3'- aaauGCUCCGGCUCaCGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 15721 | 0.68 | 0.728859 |
Target: 5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3' miRNA: 3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 11698 | 0.66 | 0.840415 |
Target: 5'- --cGCGuGGCCGAGgcgcggcggGCgCGGGCGc- -3' miRNA: 3'- aaaUGCuCCGGCUCa--------CGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 9509 | 0.67 | 0.805647 |
Target: 5'- -cUACGGcGGgCGGGcgggGCCCGGGCGc- -3' miRNA: 3'- aaAUGCU-CCgGCUCa---CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 8455 | 0.67 | 0.814607 |
Target: 5'- --gGCGaAGGCCGGGccgaGCCCGG-CGg- -3' miRNA: 3'- aaaUGC-UCCGGCUCa---CGGGCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 6023 | 0.68 | 0.728859 |
Target: 5'- --cGCGuGGCgCGGGcggGCCCGGACc-- -3' miRNA: 3'- aaaUGCuCCG-GCUCa--CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 5505 | 0.67 | 0.790975 |
Target: 5'- -gUGCGGGGCCGccggcaaugagguagGGcGCCgGGACGg- -3' miRNA: 3'- aaAUGCUCCGGC---------------UCaCGGgCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 2945 | 0.67 | 0.768263 |
Target: 5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3' miRNA: 3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 607 | 0.67 | 0.777822 |
Target: 5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3' miRNA: 3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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