Results 81 - 91 of 91 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 23580 | 5' | -56.4 | NC_005261.1 | + | 29299 | 0.66 | 0.840415 |
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Target: 5'- --gGCGAGGCCug--GCCCGG-CAg- -3' miRNA: 3'- aaaUGCUCCGGcucaCGGGCCuGUau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 15967 | 0.66 | 0.840415 |
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Target: 5'- --gGCG-GGCgGGGgaggGCCCGGGCc-- -3' miRNA: 3'- aaaUGCuCCGgCUCa---CGGGCCUGuau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 39728 | 0.66 | 0.839582 |
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Target: 5'- gUUugGGGGgCGGGUGCCCcagucgcGGAUc-- -3' miRNA: 3'- aAAugCUCCgGCUCACGGG-------CCUGuau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 19722 | 0.66 | 0.831999 |
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Target: 5'- ---uCGAGGCCGAG-GCCCcGAUc-- -3' miRNA: 3'- aaauGCUCCGGCUCaCGGGcCUGuau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 116637 | 0.66 | 0.831999 |
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Target: 5'- --gACGAGGgCGAG-GCCCGcGCGc- -3' miRNA: 3'- aaaUGCUCCgGCUCaCGGGCcUGUau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 128882 | 0.67 | 0.796524 |
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Target: 5'- --gACGAGGCgGGG-GCCgGGugGg- -3' miRNA: 3'- aaaUGCUCCGgCUCaCGGgCCugUau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 63598 | 0.67 | 0.796524 |
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Target: 5'- --cGCGGGGCCcuGUGgCCGGAUg-- -3' miRNA: 3'- aaaUGCUCCGGcuCACgGGCCUGuau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 44880 | 0.67 | 0.787246 |
|
Target: 5'- --cGCGAGcGCCGcGGggaugGCCgGGGCGUAc -3' miRNA: 3'- aaaUGCUC-CGGC-UCa----CGGgCCUGUAU- -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 34321 | 0.67 | 0.785372 |
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Target: 5'- --gGgGAGGCCGAGgggccccaagggGCCgGGGCGg- -3' miRNA: 3'- aaaUgCUCCGGCUCa-----------CGGgCCUGUau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 607 | 0.67 | 0.777822 |
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Target: 5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3' miRNA: 3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5' |
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| 23580 | 5' | -56.4 | NC_005261.1 | + | 23481 | 0.66 | 0.856648 |
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Target: 5'- --gGCGAGuGCgCGGGcccGCCUGGGCAg- -3' miRNA: 3'- aaaUGCUC-CG-GCUCa--CGGGCCUGUau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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