Results 61 - 80 of 91 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23580 | 5' | -56.4 | NC_005261.1 | + | 98362 | 0.71 | 0.583927 |
Target: 5'- --cGCGGccugcuGGCCGuGUGCCUGGGCGc- -3' miRNA: 3'- aaaUGCU------CCGGCuCACGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 78373 | 0.71 | 0.532706 |
Target: 5'- -cUACGAGGCCGAcGU-CCCGcGCAUGg -3' miRNA: 3'- aaAUGCUCCGGCU-CAcGGGCcUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 15721 | 0.68 | 0.728859 |
Target: 5'- --gGCGAccccauGGuuGAGaGCCCGGACAc- -3' miRNA: 3'- aaaUGCU------CCggCUCaCGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 72051 | 0.68 | 0.748774 |
Target: 5'- ----gGAGGCgGAcGUGCCUGuGACGUAc -3' miRNA: 3'- aaaugCUCCGgCU-CACGGGC-CUGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 131771 | 0.68 | 0.748774 |
Target: 5'- ---gUGGGGCgGGGUGUgCGGGCAg- -3' miRNA: 3'- aaauGCUCCGgCUCACGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 107495 | 0.66 | 0.840415 |
Target: 5'- --gGCuGAGGCUGGG-GCUCGGGCc-- -3' miRNA: 3'- aaaUG-CUCCGGCUCaCGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 54089 | 0.66 | 0.840415 |
Target: 5'- --gGCGuGGCCGAG-GCCCGccaGCGa- -3' miRNA: 3'- aaaUGCuCCGGCUCaCGGGCc--UGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 11698 | 0.66 | 0.840415 |
Target: 5'- --cGCGuGGCCGAGgcgcggcggGCgCGGGCGc- -3' miRNA: 3'- aaaUGCuCCGGCUCa--------CGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 39942 | 0.66 | 0.831999 |
Target: 5'- ---cCGAGGCCGcGgacGCgCCGGGCGUc -3' miRNA: 3'- aaauGCUCCGGCuCa--CG-GGCCUGUAu -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 53855 | 0.66 | 0.831999 |
Target: 5'- --gGCGGcGGCCGAGgccgaGCCCgcGGGCGg- -3' miRNA: 3'- aaaUGCU-CCGGCUCa----CGGG--CCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 125719 | 0.66 | 0.823394 |
Target: 5'- --cGCGGGGCCccgcgcGGUcGCCCGGgggGCAUGg -3' miRNA: 3'- aaaUGCUCCGGc-----UCA-CGGGCC---UGUAU- -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 102278 | 0.67 | 0.814607 |
Target: 5'- --aGCGGccuGGCCGGGcucggGCCUGGGCGc- -3' miRNA: 3'- aaaUGCU---CCGGCUCa----CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 102589 | 0.67 | 0.814607 |
Target: 5'- --aGCGGGGCUGGG-GCUgGGGCu-- -3' miRNA: 3'- aaaUGCUCCGGCUCaCGGgCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 8455 | 0.67 | 0.814607 |
Target: 5'- --gGCGaAGGCCGGGccgaGCCCGG-CGg- -3' miRNA: 3'- aaaUGC-UCCGGCUCa---CGGGCCuGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 9509 | 0.67 | 0.805647 |
Target: 5'- -cUACGGcGGgCGGGcgggGCCCGGGCGc- -3' miRNA: 3'- aaAUGCU-CCgGCUCa---CGGGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 55796 | 0.67 | 0.787246 |
Target: 5'- --cGCGGGGCCGGccGgggGCgCGGACGg- -3' miRNA: 3'- aaaUGCUCCGGCU--Ca--CGgGCCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 105124 | 0.67 | 0.777822 |
Target: 5'- --cGCgGAGGgCGAGUGCCC-GACGc- -3' miRNA: 3'- aaaUG-CUCCgGCUCACGGGcCUGUau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 107462 | 0.67 | 0.768263 |
Target: 5'- ---cCGcGGCCGGGcuccgGCCCGGACu-- -3' miRNA: 3'- aaauGCuCCGGCUCa----CGGGCCUGuau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 61743 | 0.67 | 0.768263 |
Target: 5'- --cGCGAGcGCCGAGgGCUCGGGg--- -3' miRNA: 3'- aaaUGCUC-CGGCUCaCGGGCCUguau -5' |
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23580 | 5' | -56.4 | NC_005261.1 | + | 16956 | 0.68 | 0.757602 |
Target: 5'- --aGCGAGGCCGGGcgGCCgccccgucugcggCGGACc-- -3' miRNA: 3'- aaaUGCUCCGGCUCa-CGG-------------GCCUGuau -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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