miRNA display CGI


Results 41 - 60 of 436 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 3' -57.9 NC_005261.1 + 15423 0.67 0.809186
Target:  5'- -aGCCcagaGUCGGCCgg-GCGCgGGCCg -3'
miRNA:   3'- cgCGGac--UAGCUGGagaCGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 15488 0.7 0.58655
Target:  5'- aGUaCCUGAa-GGCCUCgagcgGCGCCGACg -3'
miRNA:   3'- -CGcGGACUagCUGGAGa----CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 15792 0.68 0.754837
Target:  5'- gGCGCCgcccGcgCGGCCa--GCGCCG-CCa -3'
miRNA:   3'- -CGCGGa---CuaGCUGGagaCGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 15892 0.68 0.758598
Target:  5'- cCGCCaGG-CGAgCUCUGCgagcgccaccugaccGCCGGCCc -3'
miRNA:   3'- cGCGGaCUaGCUgGAGACG---------------CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 15971 0.66 0.83438
Target:  5'- gGC-CCUGA-CGGCggCgGCGCUGGCCc -3'
miRNA:   3'- -CGcGGACUaGCUGgaGaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 16062 0.68 0.735793
Target:  5'- gGCGCCaucguggccgcGGUCGAgCUg-GCGUCGGCCg -3'
miRNA:   3'- -CGCGGa----------CUAGCUgGAgaCGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 16232 0.67 0.782599
Target:  5'- aGC-CCUcggggcGGUCGACgUCcGCGCCGggGCCg -3'
miRNA:   3'- -CGcGGA------CUAGCUGgAGaCGCGGC--UGG- -5'
23581 3' -57.9 NC_005261.1 + 16867 0.71 0.566653
Target:  5'- gGCGCCUGcaguacgCGaACCUgUGCGUCG-CCu -3'
miRNA:   3'- -CGCGGACua-----GC-UGGAgACGCGGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 19291 0.66 0.81775
Target:  5'- uGCGCCg---CGGCCagccgCgcgGCGCCGcGCCc -3'
miRNA:   3'- -CGCGGacuaGCUGGa----Ga--CGCGGC-UGG- -5'
23581 3' -57.9 NC_005261.1 + 19398 0.69 0.656827
Target:  5'- gGgGCUcggUGAUCGGCCcgUGUGCCGcGCCg -3'
miRNA:   3'- -CgCGG---ACUAGCUGGagACGCGGC-UGG- -5'
23581 3' -57.9 NC_005261.1 + 19855 0.66 0.82615
Target:  5'- aGCGCCUcGGgccgCGcGCCcCaGCGCCcGGCCg -3'
miRNA:   3'- -CGCGGA-CUa---GC-UGGaGaCGCGG-CUGG- -5'
23581 3' -57.9 NC_005261.1 + 19942 0.66 0.832748
Target:  5'- aGCGuCCUGGgcggggguggggCGGCCUCggcUGCGgcagCGACCg -3'
miRNA:   3'- -CGC-GGACUa-----------GCUGGAG---ACGCg---GCUGG- -5'
23581 3' -57.9 NC_005261.1 + 20077 0.68 0.735793
Target:  5'- cCGCCgcGA-CGGCCagcgUCUGCgcgaGCCGGCCg -3'
miRNA:   3'- cGCGGa-CUaGCUGG----AGACG----CGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 20503 0.71 0.537155
Target:  5'- gGCGCCagcGcgCGGCCgCUugcgggcccgcGCGCCGGCCu -3'
miRNA:   3'- -CGCGGa--CuaGCUGGaGA-----------CGCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 20705 0.66 0.8503
Target:  5'- gGCGCCgcGGUgGACacgcucaUCguggcgGCGCCGGCg -3'
miRNA:   3'- -CGCGGa-CUAgCUGg------AGa-----CGCGGCUGg -5'
23581 3' -57.9 NC_005261.1 + 20864 0.67 0.809186
Target:  5'- cGCGCCUccagGAgggCGGCCUUgcggGCGgCG-CCu -3'
miRNA:   3'- -CGCGGA----CUa--GCUGGAGa---CGCgGCuGG- -5'
23581 3' -57.9 NC_005261.1 + 20958 0.67 0.809186
Target:  5'- cGCGCCaGGcUCGccguCCUCgagGCGCgCGGCg -3'
miRNA:   3'- -CGCGGaCU-AGCu---GGAGa--CGCG-GCUGg -5'
23581 3' -57.9 NC_005261.1 + 21190 0.68 0.754837
Target:  5'- gGCGCgaGcgCGGCCgcgGaCGCUGGCCc -3'
miRNA:   3'- -CGCGgaCuaGCUGGagaC-GCGGCUGG- -5'
23581 3' -57.9 NC_005261.1 + 21570 0.66 0.82615
Target:  5'- gGCGCCgcggagcaGGUCGGCggCgggcGCGCgGGCCu -3'
miRNA:   3'- -CGCGGa-------CUAGCUGgaGa---CGCGgCUGG- -5'
23581 3' -57.9 NC_005261.1 + 21755 0.68 0.758598
Target:  5'- uGCGCCUGGagCGcgcgccgggcgagccGCCgcgGCGCgGGCCg -3'
miRNA:   3'- -CGCGGACUa-GC---------------UGGagaCGCGgCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.