miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23581 5' -56.3 NC_005261.1 + 14004 0.66 0.8759
Target:  5'- cGGAUCGG-GCCGcUCGGUGa-GCUCu -3'
miRNA:   3'- aCCUGGUCuCGGUcAGCUACagCGAG- -5'
23581 5' -56.3 NC_005261.1 + 34197 0.66 0.8759
Target:  5'- aGGGCCGGAGgCAGaCGGcgcGUCGgaCg -3'
miRNA:   3'- aCCUGGUCUCgGUCaGCUa--CAGCgaG- -5'
23581 5' -56.3 NC_005261.1 + 94361 0.66 0.868513
Target:  5'- cGGcACaCAGcgcacGGCCGGUCGAUGgccagCGCg- -3'
miRNA:   3'- aCC-UG-GUC-----UCGGUCAGCUACa----GCGag -5'
23581 5' -56.3 NC_005261.1 + 32354 0.66 0.853095
Target:  5'- cGGACCAGGGCCcG-CGGgagaCGCUg -3'
miRNA:   3'- aCCUGGUCUCGGuCaGCUaca-GCGAg -5'
23581 5' -56.3 NC_005261.1 + 136871 0.66 0.853095
Target:  5'- cGGACCAGGGCCcG-CGGgagaCGCUg -3'
miRNA:   3'- aCCUGGUCUCGGuCaGCUaca-GCGAg -5'
23581 5' -56.3 NC_005261.1 + 92770 0.66 0.85071
Target:  5'- cGGACCGG-GCCgagcccgggcucggGGUCGGgguccgGUCGC-Cg -3'
miRNA:   3'- aCCUGGUCuCGG--------------UCAGCUa-----CAGCGaG- -5'
23581 5' -56.3 NC_005261.1 + 97762 0.66 0.845076
Target:  5'- aGGGCCuGAGCC--UCGAcaagGUCGC-Cg -3'
miRNA:   3'- aCCUGGuCUCGGucAGCUa---CAGCGaG- -5'
23581 5' -56.3 NC_005261.1 + 77235 0.67 0.828454
Target:  5'- aGGAgCCAGAGCgCAGcCGGgcucaaaagGgcgCGCUCg -3'
miRNA:   3'- aCCU-GGUCUCG-GUCaGCUa--------Ca--GCGAG- -5'
23581 5' -56.3 NC_005261.1 + 92250 0.67 0.828454
Target:  5'- aUGGagGCCAGgaaGGcCCGGUacucguaGAUGUUGCUCa -3'
miRNA:   3'- -ACC--UGGUC---UC-GGUCAg------CUACAGCGAG- -5'
23581 5' -56.3 NC_005261.1 + 57901 0.67 0.828454
Target:  5'- gGaGGCCGGGGCCgcGGUCGAg--CGCg- -3'
miRNA:   3'- aC-CUGGUCUCGG--UCAGCUacaGCGag -5'
23581 5' -56.3 NC_005261.1 + 90789 0.67 0.811104
Target:  5'- cGGGCCGGGcGCCuGUCGGacgUGuUCGC-Ca -3'
miRNA:   3'- aCCUGGUCU-CGGuCAGCU---AC-AGCGaG- -5'
23581 5' -56.3 NC_005261.1 + 104850 0.67 0.810219
Target:  5'- cGGACCGcgcGGGUCAcgcacgcGUCGAUGUCaGCgUCg -3'
miRNA:   3'- aCCUGGU---CUCGGU-------CAGCUACAG-CG-AG- -5'
23581 5' -56.3 NC_005261.1 + 118241 0.67 0.802176
Target:  5'- gGGGCCGcGGCCGGggaCGAUagggcgGUCGCUg -3'
miRNA:   3'- aCCUGGUcUCGGUCa--GCUA------CAGCGAg -5'
23581 5' -56.3 NC_005261.1 + 76724 0.67 0.802176
Target:  5'- cGGGCCucgccGGGGCCGG-CGGUGcucUCGgUCa -3'
miRNA:   3'- aCCUGG-----UCUCGGUCaGCUAC---AGCgAG- -5'
23581 5' -56.3 NC_005261.1 + 60420 0.67 0.802176
Target:  5'- cGGGcCCGGGGCCGccgCGcucgcGUCGCUCa -3'
miRNA:   3'- aCCU-GGUCUCGGUca-GCua---CAGCGAG- -5'
23581 5' -56.3 NC_005261.1 + 131703 0.67 0.802176
Target:  5'- cUGGACCgccucgAGAGCCAGgCGgcG-CGCUUc -3'
miRNA:   3'- -ACCUGG------UCUCGGUCaGCuaCaGCGAG- -5'
23581 5' -56.3 NC_005261.1 + 69814 0.68 0.783859
Target:  5'- aGGugCAGGacgcGCCGcUCGGUGUCGUg- -3'
miRNA:   3'- aCCugGUCU----CGGUcAGCUACAGCGag -5'
23581 5' -56.3 NC_005261.1 + 104705 0.68 0.755363
Target:  5'- cUGGugcucCCGGGGCCAG-CGGUGcCGC-Cg -3'
miRNA:   3'- -ACCu----GGUCUCGGUCaGCUACaGCGaG- -5'
23581 5' -56.3 NC_005261.1 + 20508 0.68 0.755363
Target:  5'- cGGGCCGGcuagggacGCCGGUCGuUGUcuccgaccgCGCUCu -3'
miRNA:   3'- aCCUGGUCu-------CGGUCAGCuACA---------GCGAG- -5'
23581 5' -56.3 NC_005261.1 + 137870 0.68 0.755363
Target:  5'- cUGGugcucCCGGGGCCAG-CGGUGcCGC-Cg -3'
miRNA:   3'- -ACCu----GGUCUCGGUCaGCUACaGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.