miRNA display CGI


Results 41 - 60 of 794 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 34762 0.66 0.822644
Target:  5'- cCAGCuggacgcccuGGCGACgGGCGcGGCGgCCGACc -3'
miRNA:   3'- aGUUG----------UCGCUG-UCGC-UCGCgGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 73059 0.66 0.822644
Target:  5'- gUCAucCA-CGGCAGCGAGCGCaccuucugcgcgCUGGCGc -3'
miRNA:   3'- -AGUu-GUcGCUGUCGCUCGCG------------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78200 0.66 0.838419
Target:  5'- gUCGGCGccGaCGGCGGCGGGCucuucgugucccuGCCCGuCGc -3'
miRNA:   3'- -AGUUGU--C-GCUGUCGCUCG-------------CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 122432 0.66 0.820095
Target:  5'- ----gGGUGGCGGCGcuggccgcgcgggcGGCGCCCGccaGCGg -3'
miRNA:   3'- aguugUCGCUGUCGC--------------UCGCGGGC---UGC- -5'
23582 3' -57.5 NC_005261.1 + 85216 0.66 0.822644
Target:  5'- gCGGaAGCGcUGGCGAGCuGCgCCGACGc -3'
miRNA:   3'- aGUUgUCGCuGUCGCUCG-CG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 124582 0.66 0.822644
Target:  5'- gCGGCGGCGGCacGGCGcGCGCuuCCG-CGu -3'
miRNA:   3'- aGUUGUCGCUG--UCGCuCGCG--GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 127850 0.66 0.831027
Target:  5'- cCGACgAGCGcGCGGCGcAGCGCgCG-CGu -3'
miRNA:   3'- aGUUG-UCGC-UGUCGC-UCGCGgGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 76284 0.66 0.839231
Target:  5'- -gGAC-GCGGuCGGCGcGCGCCCcguGGCGa -3'
miRNA:   3'- agUUGuCGCU-GUCGCuCGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 31900 0.66 0.84725
Target:  5'- -gGAC-GCGGCGGCGGG-GCCguggcucaCGACGg -3'
miRNA:   3'- agUUGuCGCUGUCGCUCgCGG--------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 36342 0.66 0.822644
Target:  5'- -gAGgAGCGcgcGCGGCuGGGCGCCCuGCGc -3'
miRNA:   3'- agUUgUCGC---UGUCG-CUCGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 62070 0.66 0.821796
Target:  5'- aCuGCAGCGccACGGCGucguGCGCCgccacgaccuccaCGACGg -3'
miRNA:   3'- aGuUGUCGC--UGUCGCu---CGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 18737 0.66 0.822644
Target:  5'- gUUGGCgGGCGGCGGCGccGGCGUCCccaagGGCGu -3'
miRNA:   3'- -AGUUG-UCGCUGUCGC--UCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 3910 0.66 0.822644
Target:  5'- aCAGCAGCGAgaccagcucCAGCGcGGCGaaggCGGCGa -3'
miRNA:   3'- aGUUGUCGCU---------GUCGC-UCGCgg--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 7142 0.66 0.822644
Target:  5'- --cGCGGCGACGGCGuacguggccaGGCaGuCCCGcACGg -3'
miRNA:   3'- aguUGUCGCUGUCGC----------UCG-C-GGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 25257 0.66 0.822644
Target:  5'- -aGAUGGCGGCGGUG-GCGgCCGcCGu -3'
miRNA:   3'- agUUGUCGCUGUCGCuCGCgGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 5755 0.66 0.84725
Target:  5'- ---cCAG-GACGGCGAgGCGCugCCGGCGc -3'
miRNA:   3'- aguuGUCgCUGUCGCU-CGCG--GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 59188 0.66 0.822644
Target:  5'- cUCAAgGaCGACGccaagggcGCGGGCGCCCcgGGCGa -3'
miRNA:   3'- -AGUUgUcGCUGU--------CGCUCGCGGG--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 61082 0.66 0.81409
Target:  5'- -----cGCGGCGGCG-GCGCgaGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCuCGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 99684 0.66 0.822644
Target:  5'- gCAugGccgcGCGcCGGCGcuGUGCCCGGCGc -3'
miRNA:   3'- aGUugU----CGCuGUCGCu-CGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 73392 0.66 0.831027
Target:  5'- gUCAugGcGCuGCAGCGcGCGgaCCCGGCGc -3'
miRNA:   3'- -AGUugU-CGcUGUCGCuCGC--GGGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.