miRNA display CGI


Results 61 - 80 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 84786 0.66 0.81409
Target:  5'- ---cCGGCGACcuccCGA-CGCCCGACGg -3'
miRNA:   3'- aguuGUCGCUGuc--GCUcGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78200 0.66 0.838419
Target:  5'- gUCGGCGccGaCGGCGGCGGGCucuucgugucccuGCCCGuCGc -3'
miRNA:   3'- -AGUUGU--C-GCUGUCGCUCG-------------CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 106077 0.66 0.839231
Target:  5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3'
miRNA:   3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 106406 0.66 0.850405
Target:  5'- aCGGCGcGCGcCAGCGcgcgccgcucaggccAGCGCgCGGCGc -3'
miRNA:   3'- aGUUGU-CGCuGUCGC---------------UCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 33103 0.66 0.855078
Target:  5'- --uGCGcGCGcCGGCGGcccGCGCCCGcGCGg -3'
miRNA:   3'- aguUGU-CGCuGUCGCU---CGCGGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 133829 0.66 0.850405
Target:  5'- cCGGCAGCGcgccgccgccgcccgGCcGCGuGCGCUuCGGCGg -3'
miRNA:   3'- aGUUGUCGC---------------UGuCGCuCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 30412 0.66 0.84725
Target:  5'- -aGGCGGCGGCGGCcgcuaGGGCcGCCgCGcGCGa -3'
miRNA:   3'- agUUGUCGCUGUCG-----CUCG-CGG-GC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 104192 0.66 0.84725
Target:  5'- -aGGCAG-GGCAGCGcGCGCgCCG-CGc -3'
miRNA:   3'- agUUGUCgCUGUCGCuCGCG-GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 89148 0.66 0.855078
Target:  5'- cUCAGCGGgcccGCGGCGcGUGCCCGcuucGCGa -3'
miRNA:   3'- -AGUUGUCgc--UGUCGCuCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 14173 0.66 0.817532
Target:  5'- gUCGGCcgagcuguaccugcuGGCGcUAGCGcacucagaGGCGCCCGGCu -3'
miRNA:   3'- -AGUUG---------------UCGCuGUCGC--------UCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 73182 0.66 0.81409
Target:  5'- aUCAAC-GCGuaccuggggaACGGUGAGuUGCCCGAgGa -3'
miRNA:   3'- -AGUUGuCGC----------UGUCGCUC-GCGGGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 34762 0.66 0.822644
Target:  5'- cCAGCuggacgcccuGGCGACgGGCGcGGCGgCCGACc -3'
miRNA:   3'- aGUUG----------UCGCUG-UCGC-UCGCgGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 5332 0.66 0.84725
Target:  5'- cUCGGCGcCGcCcGCG-GCGCCCGGCu -3'
miRNA:   3'- -AGUUGUcGCuGuCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 131774 0.66 0.855078
Target:  5'- -gGGCGGgGuguGCGGGCaGCCCGGCc -3'
miRNA:   3'- agUUGUCgCuguCGCUCG-CGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 18737 0.66 0.822644
Target:  5'- gUUGGCgGGCGGCGGCGccGGCGUCCccaagGGCGu -3'
miRNA:   3'- -AGUUG-UCGCUGUCGC--UCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 52248 0.66 0.831027
Target:  5'- gUCGGCGGCG-CAGCucGAGCGCgCaaucACGg -3'
miRNA:   3'- -AGUUGUCGCuGUCG--CUCGCGgGc---UGC- -5'
23582 3' -57.5 NC_005261.1 + 28735 0.66 0.84725
Target:  5'- --cGCGGCGGgcGCGGGC-CCCGGCc -3'
miRNA:   3'- aguUGUCGCUguCGCUCGcGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 36342 0.66 0.822644
Target:  5'- -gAGgAGCGcgcGCGGCuGGGCGCCCuGCGc -3'
miRNA:   3'- agUUgUCGC---UGUCG-CUCGCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 78850 0.66 0.855078
Target:  5'- cUCGGCGccGUGGC-GCGGGCG-CUGGCGg -3'
miRNA:   3'- -AGUUGU--CGCUGuCGCUCGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78496 0.66 0.839231
Target:  5'- -gGAgGGCGGCcGCGcGCcgccgcugccGCCCGGCGg -3'
miRNA:   3'- agUUgUCGCUGuCGCuCG----------CGGGCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.