miRNA display CGI


Results 81 - 100 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 72571 0.66 0.84725
Target:  5'- gCGGCGcugcGCGcCGGCGcGCGCCagaGGCGa -3'
miRNA:   3'- aGUUGU----CGCuGUCGCuCGCGGg--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 59188 0.66 0.822644
Target:  5'- cUCAAgGaCGACGccaagggcGCGGGCGCCCcgGGCGa -3'
miRNA:   3'- -AGUUgUcGCUGU--------CGCUCGCGGG--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 4822 0.66 0.85275
Target:  5'- aCAcCAGCGAgCGGgccuuguuuugggcCGcGCGCCCGugGg -3'
miRNA:   3'- aGUuGUCGCU-GUC--------------GCuCGCGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 89148 0.66 0.855078
Target:  5'- cUCAGCGGgcccGCGGCGcGUGCCCGcuucGCGa -3'
miRNA:   3'- -AGUUGUCgc--UGUCGCuCGCGGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 60426 0.66 0.830196
Target:  5'- gCGGCAGCu-CGGCGGGCGCgcccucgCCGGgGu -3'
miRNA:   3'- aGUUGUCGcuGUCGCUCGCG-------GGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 89400 0.66 0.831027
Target:  5'- -----cGCGGCGGCGGG-GCCgaCGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCUCgCGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 106077 0.66 0.839231
Target:  5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3'
miRNA:   3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 122947 0.66 0.822644
Target:  5'- -aGGCcGCGACcGCGcGC-CCCGGCGg -3'
miRNA:   3'- agUUGuCGCUGuCGCuCGcGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 85216 0.66 0.822644
Target:  5'- gCGGaAGCGcUGGCGAGCuGCgCCGACGc -3'
miRNA:   3'- aGUUgUCGCuGUCGCUCG-CG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 70401 0.66 0.839231
Target:  5'- -aGAguGCGGCccuccuGCGcGCGCCCGAg- -3'
miRNA:   3'- agUUguCGCUGu-----CGCuCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 88277 0.66 0.827695
Target:  5'- aCGACGGCGccgccuccuuuuuuGCGcggcuccGCGGGCGCCUcgaGGCGg -3'
miRNA:   3'- aGUUGUCGC--------------UGU-------CGCUCGCGGG---CUGC- -5'
23582 3' -57.5 NC_005261.1 + 78200 0.66 0.838419
Target:  5'- gUCGGCGccGaCGGCGGCGGGCucuucgugucccuGCCCGuCGc -3'
miRNA:   3'- -AGUUGU--C-GCUGUCGCUCG-------------CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 68959 0.66 0.839231
Target:  5'- gUCGGCgcgGGCGGCucgccggggucGGCGcgggccAGCGCCuCGGCGa -3'
miRNA:   3'- -AGUUG---UCGCUG-----------UCGC------UCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 7142 0.66 0.822644
Target:  5'- --cGCGGCGACGGCGuacguggccaGGCaGuCCCGcACGg -3'
miRNA:   3'- aguUGUCGCUGUCGC----------UCG-C-GGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 35893 0.66 0.846457
Target:  5'- uUCGACGcggccgagcuggcGCGGCuGCGcgccGCGCCgCGGCGc -3'
miRNA:   3'- -AGUUGU-------------CGCUGuCGCu---CGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 5332 0.66 0.84725
Target:  5'- cUCGGCGcCGcCcGCG-GCGCCCGGCu -3'
miRNA:   3'- -AGUUGUcGCuGuCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 72748 0.66 0.822644
Target:  5'- ----gAGCaGAUGGUG-GCGCCCGGCa -3'
miRNA:   3'- aguugUCG-CUGUCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 83483 0.66 0.822644
Target:  5'- -uGGCGGCGAUcgAGCGcGCGUUCGuCGg -3'
miRNA:   3'- agUUGUCGCUG--UCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 4890 0.66 0.81409
Target:  5'- gCGGCAGCGcCGcGCGcGCGUgCCGGCa -3'
miRNA:   3'- aGUUGUCGCuGU-CGCuCGCG-GGCUGc -5'
23582 3' -57.5 NC_005261.1 + 14173 0.66 0.817532
Target:  5'- gUCGGCcgagcuguaccugcuGGCGcUAGCGcacucagaGGCGCCCGGCu -3'
miRNA:   3'- -AGUUG---------------UCGCuGUCGC--------UCGCGGGCUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.