miRNA display CGI


Results 101 - 120 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 104885 0.66 0.839231
Target:  5'- gUCGAUcGCcGCcGCGuGCGCCCgGACGc -3'
miRNA:   3'- -AGUUGuCGcUGuCGCuCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 35780 0.66 0.84725
Target:  5'- -aGACAGgaGGCccGCGGGCGCCaUGGCGc -3'
miRNA:   3'- agUUGUCg-CUGu-CGCUCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78850 0.66 0.855078
Target:  5'- cUCGGCGccGUGGC-GCGGGCG-CUGGCGg -3'
miRNA:   3'- -AGUUGU--CGCUGuCGCUCGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 16431 0.66 0.84725
Target:  5'- cUCGACGGCgGGCGGCG-GCucguaGCCCuuCGa -3'
miRNA:   3'- -AGUUGUCG-CUGUCGCuCG-----CGGGcuGC- -5'
23582 3' -57.5 NC_005261.1 + 5755 0.66 0.84725
Target:  5'- ---cCAG-GACGGCGAgGCGCugCCGGCGc -3'
miRNA:   3'- aguuGUCgCUGUCGCU-CGCG--GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 32896 0.66 0.822644
Target:  5'- aCGGCcGUGGCGGUGGGCGgCgCCGggGCGg -3'
miRNA:   3'- aGUUGuCGCUGUCGCUCGC-G-GGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 126590 0.66 0.855078
Target:  5'- cCGGCGG-GGCucgAGgGGGCGCCgCGugGg -3'
miRNA:   3'- aGUUGUCgCUG---UCgCUCGCGG-GCugC- -5'
23582 3' -57.5 NC_005261.1 + 73182 0.66 0.81409
Target:  5'- aUCAAC-GCGuaccuggggaACGGUGAGuUGCCCGAgGa -3'
miRNA:   3'- -AGUUGuCGC----------UGUCGCUC-GCGGGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 59188 0.66 0.822644
Target:  5'- cUCAAgGaCGACGccaagggcGCGGGCGCCCcgGGCGa -3'
miRNA:   3'- -AGUUgUcGCUGU--------CGCUCGCGGG--CUGC- -5'
23582 3' -57.5 NC_005261.1 + 85216 0.66 0.822644
Target:  5'- gCGGaAGCGcUGGCGAGCuGCgCCGACGc -3'
miRNA:   3'- aGUUgUCGCuGUCGCUCG-CG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 109180 0.66 0.81409
Target:  5'- gUCGgccGCGGCGGCGGCG-GCcCCCGuguCa -3'
miRNA:   3'- -AGU---UGUCGCUGUCGCuCGcGGGCu--Gc -5'
23582 3' -57.5 NC_005261.1 + 122432 0.66 0.820095
Target:  5'- ----gGGUGGCGGCGcuggccgcgcgggcGGCGCCCGccaGCGg -3'
miRNA:   3'- aguugUCGCUGUCGC--------------UCGCGGGC---UGC- -5'
23582 3' -57.5 NC_005261.1 + 73392 0.66 0.831027
Target:  5'- gUCAugGcGCuGCAGCGcGCGgaCCCGGCGc -3'
miRNA:   3'- -AGUugU-CGcUGUCGCuCGC--GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 100035 0.66 0.831027
Target:  5'- gCAGCAGC-ACGccGCGGcGCGCCCaGGCc -3'
miRNA:   3'- aGUUGUCGcUGU--CGCU-CGCGGG-CUGc -5'
23582 3' -57.5 NC_005261.1 + 99684 0.66 0.822644
Target:  5'- gCAugGccgcGCGcCGGCGcuGUGCCCGGCGc -3'
miRNA:   3'- aGUugU----CGCuGUCGCu-CGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 83483 0.66 0.822644
Target:  5'- -uGGCGGCGAUcgAGCGcGCGUUCGuCGg -3'
miRNA:   3'- agUUGUCGCUG--UCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 78200 0.66 0.838419
Target:  5'- gUCGGCGccGaCGGCGGCGGGCucuucgugucccuGCCCGuCGc -3'
miRNA:   3'- -AGUUGU--C-GCUGUCGCUCG-------------CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 61082 0.66 0.81409
Target:  5'- -----cGCGGCGGCG-GCGCgaGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCuCGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 60426 0.66 0.830196
Target:  5'- gCGGCAGCu-CGGCGGGCGCgcccucgCCGGgGu -3'
miRNA:   3'- aGUUGUCGcuGUCGCUCGCG-------GGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 54781 0.66 0.84725
Target:  5'- gCGACAG-GACGGCGcGC-CCCGcCGc -3'
miRNA:   3'- aGUUGUCgCUGUCGCuCGcGGGCuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.