miRNA display CGI

Results 121 - 140 of 794 are showing below:
Show page: 1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23582	3'	-57.5	NC_005261.1	+	56007	0.66	0.854304
	Target:  5'- gCGGgGGCGGgGGCGGggaagacgcaaucGCGCCCguGACGc -3' miRNA:   3'- aGUUgUCGCUgUCGCU-------------CGCGGG--CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	3910	0.66	0.822644
	Target:  5'- aCAGCAGCGAgaccagcucCAGCGcGGCGaaggCGGCGa -3' miRNA:   3'- aGUUGUCGCU---------GUCGC-UCGCgg--GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	25257	0.66	0.822644
	Target:  5'- -aGAUGGCGGCGGUG-GCGgCCGcCGu -3' miRNA:   3'- agUUGUCGCUGUCGCuCGCgGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	109180	0.66	0.81409
	Target:  5'- gUCGgccGCGGCGGCGGCG-GCcCCCGuguCa -3' miRNA:   3'- -AGU---UGUCGCUGUCGCuCGcGGGCu--Gc -5'
23582	3'	-57.5	NC_005261.1	+	14173	0.66	0.817532
	Target:  5'- gUCGGCcgagcuguaccugcuGGCGcUAGCGcacucagaGGCGCCCGGCu -3' miRNA:   3'- -AGUUG---------------UCGCuGUCGC--------UCGCGGGCUGc -5'
23582	3'	-57.5	NC_005261.1	+	129606	0.66	0.839231
	Target:  5'- gCGGCAauuucGCGGCGGgguCGGGCGCCUuugcaGGCGg -3' miRNA:   3'- aGUUGU-----CGCUGUC---GCUCGCGGG-----CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	49023	0.66	0.839231
	Target:  5'- cUCu-CAGCGGCGGCGGGCacGCgCaGGCa -3' miRNA:   3'- -AGuuGUCGCUGUCGCUCG--CGgG-CUGc -5'
23582	3'	-57.5	NC_005261.1	+	100181	0.66	0.839231
	Target:  5'- gCAACGccGUGGCGGCGGGgcaGCgUGGCGg -3' miRNA:   3'- aGUUGU--CGCUGUCGCUCg--CGgGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	76209	0.66	0.839231
	Target:  5'- gCAGCAGCcGCGccuGCGccgcGCGCuuGACGa -3' miRNA:   3'- aGUUGUCGcUGU---CGCu---CGCGggCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	58959	0.66	0.831027
	Target:  5'- cCAGCAGCG-CcuCG-GCGCCCG-CGu -3' miRNA:   3'- aGUUGUCGCuGucGCuCGCGGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	113285	0.66	0.854304
	Target:  5'- aCGAgGGCGugGuccucucgcugccGCGGGCcuggGCCCGGCu -3' miRNA:   3'- aGUUgUCGCugU-------------CGCUCG----CGGGCUGc -5'
23582	3'	-57.5	NC_005261.1	+	4834	0.66	0.838419
	Target:  5'- --cGCAgGCGGCGGCGuccGCGCCgcagccucaagggCGGCGg -3' miRNA:   3'- aguUGU-CGCUGUCGCu--CGCGG-------------GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	101405	0.66	0.855078
	Target:  5'- gCAGCAGCG-CcGCuuGCGUCaCGACGu -3' miRNA:   3'- aGUUGUCGCuGuCGcuCGCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	29312	0.66	0.850405
	Target:  5'- cCGGCAGCGcgccgccgccgcccgGCcGCGuGCGCUuCGGCGg -3' miRNA:   3'- aGUUGUCGC---------------UGuCGCuCGCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	73182	0.66	0.81409
	Target:  5'- aUCAAC-GCGuaccuggggaACGGUGAGuUGCCCGAgGa -3' miRNA:   3'- -AGUUGuCGC----------UGUCGCUC-GCGGGCUgC- -5'
23582	3'	-57.5	NC_005261.1	+	87567	0.66	0.81409
	Target:  5'- aCGGC-GCGGacuugGGCGAGCGCguucgCCGGCGc -3' miRNA:   3'- aGUUGuCGCUg----UCGCUCGCG-----GGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	122432	0.66	0.820095
	Target:  5'- ----gGGUGGCGGCGcuggccgcgcgggcGGCGCCCGccaGCGg -3' miRNA:   3'- aguugUCGCUGUCGC--------------UCGCGGGC---UGC- -5'
23582	3'	-57.5	NC_005261.1	+	18737	0.66	0.822644
	Target:  5'- gUUGGCgGGCGGCGGCGccGGCGUCCccaagGGCGu -3' miRNA:   3'- -AGUUG-UCGCUGUCGC--UCGCGGG-----CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	62070	0.66	0.821796
	Target:  5'- aCuGCAGCGccACGGCGucguGCGCCgccacgaccuccaCGACGg -3' miRNA:   3'- aGuUGUCGC--UGUCGCu---CGCGG-------------GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	109044	0.66	0.846457
	Target:  5'- gCAGCcgcGCGGCcgccagguagcccAGCG-GCGCCuCGGCGa -3' miRNA:   3'- aGUUGu--CGCUG-------------UCGCuCGCGG-GCUGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home