miRNA display CGI

Results 21 - 40 of 794 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23582	3'	-57.5	NC_005261.1	+	93563	0.78	0.243923
	Target:  5'- gUCGACGGCGguGCGGCGGgacgcgaucgcGCGCUCGGCGa -3' miRNA:   3'- -AGUUGUCGC--UGUCGCU-----------CGCGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	5513	0.78	0.243923
	Target:  5'- gCGGCAGCGGCGGCGAGgcCGCCggcuuCGGCGc -3' miRNA:   3'- aGUUGUCGCUGUCGCUC--GCGG-----GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	31975	0.78	0.23248
	Target:  5'- gCGGCAGCGGCGGCG-GCGgCCCGGu- -3' miRNA:   3'- aGUUGUCGCUGUCGCuCGC-GGGCUgc -5'
23582	3'	-57.5	NC_005261.1	+	106901	0.78	0.23248
	Target:  5'- gCAGCGGCGcgcugGCGGCGAGCGCgCCcGCGg -3' miRNA:   3'- aGUUGUCGC-----UGUCGCUCGCG-GGcUGC- -5'
23582	3'	-57.5	NC_005261.1	+	110030	0.78	0.243923
	Target:  5'- gCGGCAGCGGCGGCGAGgcCGCCggcuuCGGCGc -3' miRNA:   3'- aGUUGUCGCUGUCGCUC--GCGG-----GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	115415	0.78	0.243923
	Target:  5'- cCAACGGCGGCGGCGgcAGCGCCgccgccggccgCGACa -3' miRNA:   3'- aGUUGUCGCUGUCGC--UCGCGG-----------GCUGc -5'
23582	3'	-57.5	NC_005261.1	+	13017	0.78	0.243923
	Target:  5'- aUCGACGGCGauaGCAGCGAcaGCGC-CGACGa -3' miRNA:   3'- -AGUUGUCGC---UGUCGCU--CGCGgGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	82255	0.78	0.243923
	Target:  5'- cCGAUGGCGACGGCG-GCGCUCG-CGg -3' miRNA:   3'- aGUUGUCGCUGUCGCuCGCGGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	78878	0.78	0.249818
	Target:  5'- gCGACacccucguGGCGACGGCG-GCGaCCCGGCGg -3' miRNA:   3'- aGUUG--------UCGCUGUCGCuCGC-GGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	135058	0.78	0.223654
	Target:  5'- gCGGCAGCGGCccgccgcuuuccggcGGCGGGCucgcgGCCCGGCGg -3' miRNA:   3'- aGUUGUCGCUG---------------UCGCUCG-----CGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	2384	0.78	0.23248
	Target:  5'- gCAGCGGCGcgcugGCGGCGAGCGCgCCcGCGg -3' miRNA:   3'- aGUUGUCGC-----UGUCGCUCGCG-GGcUGC- -5'
23582	3'	-57.5	NC_005261.1	+	108978	0.77	0.261961
	Target:  5'- cCAGCGGCGGCGGCccgucgcgcGGCGCCgCGGCGu -3' miRNA:   3'- aGUUGUCGCUGUCGc--------UCGCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	98624	0.77	0.281069
	Target:  5'- gCGACGGgGGCGGCGggggcgcgcGGCGCUCGGCGc -3' miRNA:   3'- aGUUGUCgCUGUCGC---------UCGCGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	110063	0.77	0.281069
	Target:  5'- --cGCAGCGAgaCGGgGGGCGCCCGAgCGg -3' miRNA:   3'- aguUGUCGCU--GUCgCUCGCGGGCU-GC- -5'
23582	3'	-57.5	NC_005261.1	+	68707	0.77	0.254015
	Target:  5'- aCGACGGCGGCgccggcccucacgcGGCGGGCGCC-GGCGg -3' miRNA:   3'- aGUUGUCGCUG--------------UCGCUCGCGGgCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	19813	0.77	0.286348
	Target:  5'- gCGGCGGCGACAGCcagcgcggcugcGGCGCCCG-CGg -3' miRNA:   3'- aGUUGUCGCUGUCGc-----------UCGCGGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	35537	0.77	0.274579
	Target:  5'- -aGACGGCGGCAGCGAcgGCCgCGGCGg -3' miRNA:   3'- agUUGUCGCUGUCGCUcgCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	49204	0.77	0.273937
	Target:  5'- cCGACAGCGAgGGCGggaggccGGCGCCCaGCGc -3' miRNA:   3'- aGUUGUCGCUgUCGC-------UCGCGGGcUGC- -5'
23582	3'	-57.5	NC_005261.1	+	125972	0.77	0.28768
	Target:  5'- gCGAgAGCGACAGCGAGaCGgCgGGCGa -3' miRNA:   3'- aGUUgUCGCUGUCGCUC-GCgGgCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	30540	0.77	0.281069
	Target:  5'- uUCGGCGGCGcccccgccGCGGCGGcaaCGCCCGGCGg -3' miRNA:   3'- -AGUUGUCGC--------UGUCGCUc--GCGGGCUGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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