miRNA display CGI

Results 61 - 80 of 794 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23582	3'	-57.5	NC_005261.1	+	6157	0.76	0.301267
	Target:  5'- gCAGCGGCGACGGCGGccGCGaCCuCGGCc -3' miRNA:   3'- aGUUGUCGCUGUCGCU--CGC-GG-GCUGc -5'
23582	3'	-57.5	NC_005261.1	+	70924	0.76	0.301267
	Target:  5'- gCGGCGGcCGACGGCGGcgcGCGCgCGGCGg -3' miRNA:   3'- aGUUGUC-GCUGUCGCU---CGCGgGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	52218	0.76	0.315344
	Target:  5'- cCAGCAGCGGCuGCuGGCGCaCGACGc -3' miRNA:   3'- aGUUGUCGCUGuCGcUCGCGgGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	79516	0.76	0.315344
	Target:  5'- gCGGCGGCGGuggcgcaccucuCAGCGGcGCGCCCuGACGg -3' miRNA:   3'- aGUUGUCGCU------------GUCGCU-CGCGGG-CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	92309	0.76	0.322567
	Target:  5'- gCGGCGGgGACGGCGAGgGCgaggaCGACGg -3' miRNA:   3'- aGUUGUCgCUGUCGCUCgCGg----GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	116443	0.76	0.322567
	Target:  5'- cCGGCGGCuGCGGCGGcccGCGCCgCGGCGg -3' miRNA:   3'- aGUUGUCGcUGUCGCU---CGCGG-GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	9372	0.76	0.329912
	Target:  5'- gUCGGCAGCGACgaGGCGGG-GCaCCGugGc -3' miRNA:   3'- -AGUUGUCGCUG--UCGCUCgCG-GGCugC- -5'
23582	3'	-57.5	NC_005261.1	+	110334	0.76	0.308244
	Target:  5'- cUCGGCAGCGGCGGcCGAuGCGCgCCGGg- -3' miRNA:   3'- -AGUUGUCGCUGUC-GCU-CGCG-GGCUgc -5'
23582	3'	-57.5	NC_005261.1	+	105932	0.76	0.308244
	Target:  5'- gCGGCGGCGGgGGCG-GCGCCCGcCu -3' miRNA:   3'- aGUUGUCGCUgUCGCuCGCGGGCuGc -5'
23582	3'	-57.5	NC_005261.1	+	55128	0.76	0.308244
	Target:  5'- gCGGCGGCGGCGGCG-GCGCUggaGGCGc -3' miRNA:   3'- aGUUGUCGCUGUCGCuCGCGGg--CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	38350	0.76	0.301267
	Target:  5'- gUCAACgcccucgcgccgAGCGGCGGCG-GCGCgCGGCGg -3' miRNA:   3'- -AGUUG------------UCGCUGUCGCuCGCGgGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	105280	0.76	0.294413
	Target:  5'- gCGGCAGCGcCGGCGAGC-CCgGGCGc -3' miRNA:   3'- aGUUGUCGCuGUCGCUCGcGGgCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	4909	0.76	0.304043
	Target:  5'- uUCGGCGGCGgcugccuccgccgcgGCcGCGAGCGCCCGcgccGCGg -3' miRNA:   3'- -AGUUGUCGC---------------UGuCGCUCGCGGGC----UGC- -5'
23582	3'	-57.5	NC_005261.1	+	1415	0.76	0.308244
	Target:  5'- gCGGCGGCGGgGGCG-GCGCCCGcCu -3' miRNA:   3'- aGUUGUCGCUgUCGCuCGCGGGCuGc -5'
23582	3'	-57.5	NC_005261.1	+	137014	0.76	0.315344
	Target:  5'- gCGACGGCGGCaucGGCGGgggguccgcgccGCGCCCGGCc -3' miRNA:   3'- aGUUGUCGCUG---UCGCU------------CGCGGGCUGc -5'
23582	3'	-57.5	NC_005261.1	+	35299	0.76	0.308244
	Target:  5'- gCAGCGGCGGCGGCGcuGCGCgaagCGGCGg -3' miRNA:   3'- aGUUGUCGCUGUCGCu-CGCGg---GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	44420	0.76	0.308244
	Target:  5'- gCGGCGGUGGCGGCG-GCGCgCgGGCGg -3' miRNA:   3'- aGUUGUCGCUGUCGCuCGCG-GgCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	5857	0.75	0.33738
	Target:  5'- -gAACAGCGccgcgagcGCGGCGAGCGCgCCGcgGCGg -3' miRNA:   3'- agUUGUCGC--------UGUCGCUCGCG-GGC--UGC- -5'
23582	3'	-57.5	NC_005261.1	+	86270	0.75	0.36847
	Target:  5'- cCAGCAGCGcgGCGGCGucgucgguGGCGCCggCGACGa -3' miRNA:   3'- aGUUGUCGC--UGUCGC--------UCGCGG--GCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	37982	0.75	0.33738
	Target:  5'- cCGACugggGGCuGGCAGaCGuGCGCCCGGCGg -3' miRNA:   3'- aGUUG----UCG-CUGUC-GCuCGCGGGCUGC- -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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