miRNA display CGI


Results 81 - 100 of 794 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 133813 0.75 0.340402
Target:  5'- cUCGACGGCGACGaggcgcugcgcggccGCGuGCGCgCCGugGc -3'
miRNA:   3'- -AGUUGUCGCUGU---------------CGCuCGCG-GGCugC- -5'
23582 3' -57.5 NC_005261.1 + 329 0.75 0.352683
Target:  5'- gCGGCGGCGGCuGCGGcggcccGCaGCCCGGCGc -3'
miRNA:   3'- aGUUGUCGCUGuCGCU------CG-CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 60837 0.75 0.33738
Target:  5'- aUCAuCGGCGGCGGCGAggucgcGCGCCgGGCc -3'
miRNA:   3'- -AGUuGUCGCUGUCGCU------CGCGGgCUGc -5'
23582 3' -57.5 NC_005261.1 + 29807 0.75 0.344971
Target:  5'- gCGcCGGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- aGUuGUCGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 93899 0.75 0.36847
Target:  5'- gUCGcCAGCGACuGCGggcgcGGCGCCCG-CGg -3'
miRNA:   3'- -AGUuGUCGCUGuCGC-----UCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 50688 0.75 0.36847
Target:  5'- aUAACAuccGCGcCAGCGAcGCGCUCGACGc -3'
miRNA:   3'- aGUUGU---CGCuGUCGCU-CGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 74882 0.75 0.36847
Target:  5'- gCGGCGGCGGCGGCGgagucGGCGgCCCG-CGc -3'
miRNA:   3'- aGUUGUCGCUGUCGC-----UCGC-GGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 82679 0.75 0.36847
Target:  5'- aCGugGGCGugGGCGGG-GCCUGGCu -3'
miRNA:   3'- aGUugUCGCugUCGCUCgCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 125893 0.75 0.352683
Target:  5'- gCGGCGGCGGCcgcgccggccaAGCGcGCGCCCGcCGg -3'
miRNA:   3'- aGUUGUCGCUG-----------UCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 108410 0.75 0.344971
Target:  5'- cUCGGCGagcGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- -AGUUGU---CGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 134324 0.75 0.344971
Target:  5'- gCGcCGGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- aGUuGUCGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 37982 0.75 0.33738
Target:  5'- cCGACugggGGCuGGCAGaCGuGCGCCCGGCGg -3'
miRNA:   3'- aGUUG----UCG-CUGUC-GCuCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 98199 0.75 0.344971
Target:  5'- --cGCGGCgGGCAGCGGGCGCCgccacggcagcgCGGCGg -3'
miRNA:   3'- aguUGUCG-CUGUCGCUCGCGG------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 3893 0.75 0.344971
Target:  5'- cUCGGCGagcGCGGC-GCGGGCGCCCG-CGc -3'
miRNA:   3'- -AGUUGU---CGCUGuCGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 91272 0.75 0.33738
Target:  5'- gCAGCGGCGACGGCGcGGacugGCCCG-CGg -3'
miRNA:   3'- aGUUGUCGCUGUCGC-UCg---CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 5857 0.75 0.33738
Target:  5'- -gAACAGCGccgcgagcGCGGCGAGCGCgCCGcgGCGg -3'
miRNA:   3'- agUUGUCGC--------UGUCGCUCGCG-GGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 91238 0.75 0.360516
Target:  5'- gCGGCGGCG-CGGCGcGCGCugCCGGCGg -3'
miRNA:   3'- aGUUGUCGCuGUCGCuCGCG--GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 86270 0.75 0.36847
Target:  5'- cCAGCAGCGcgGCGGCGucgucgguGGCGCCggCGACGa -3'
miRNA:   3'- aGUUGUCGC--UGUCGC--------UCGCGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 71950 0.74 0.401469
Target:  5'- aCGcACuGCGACAgccGCGGGCGCCCGGUGg -3'
miRNA:   3'- aGU-UGuCGCUGU---CGCUCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 36382 0.74 0.401469
Target:  5'- --uGCAgGCGGcCGGCGGGCGCgCGGCGg -3'
miRNA:   3'- aguUGU-CGCU-GUCGCUCGCGgGCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.