miRNA display CGI


Results 101 - 120 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 122630 0.74 0.393045
Target:  5'- -gAACGGCGAgcGCGAG-GCCCGGCGc -3'
miRNA:   3'- agUUGUCGCUguCGCUCgCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 59730 0.74 0.393045
Target:  5'- gCGGCAGCGGCGGCGcGCGgCCGcCc -3'
miRNA:   3'- aGUUGUCGCUGUCGCuCGCgGGCuGc -5'
23582 3' -57.5 NC_005261.1 + 110233 0.74 0.401469
Target:  5'- cCucCAGCGugGGCGgcgcGGCGCCCGGgGg -3'
miRNA:   3'- aGuuGUCGCugUCGC----UCGCGGGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 130479 0.74 0.409149
Target:  5'- --cGCGGCGugccucgGCGGCGAGgGcCCCGACGa -3'
miRNA:   3'- aguUGUCGC-------UGUCGCUCgC-GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 90058 0.74 0.410008
Target:  5'- aCAGcCAGCGGCGccccGCGGGCGCCgagggcagCGACGg -3'
miRNA:   3'- aGUU-GUCGCUGU----CGCUCGCGG--------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 50992 0.74 0.410008
Target:  5'- cCGACGGCGGCgcgugggcgcGGCGGGaGCUCGGCGa -3'
miRNA:   3'- aGUUGUCGCUG----------UCGCUCgCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 52985 0.74 0.410008
Target:  5'- cCGGCAgGCGGgGGCG-GCGCCCaGGCGu -3'
miRNA:   3'- aGUUGU-CGCUgUCGCuCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 60049 0.74 0.410008
Target:  5'- cCGACGGCGGCGGCGAagagcgGCGgCCGguccGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGCU------CGCgGGC----UGC- -5'
23582 3' -57.5 NC_005261.1 + 607 0.74 0.418659
Target:  5'- -----cGCGGagGGCGAGUGCCCGACGc -3'
miRNA:   3'- aguuguCGCUg-UCGCUCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 90375 0.74 0.418659
Target:  5'- cUCGugcGCGGCGAggccccgcCGGCGgggcuGGCGCCCGGCGc -3'
miRNA:   3'- -AGU---UGUCGCU--------GUCGC-----UCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 108739 0.74 0.418659
Target:  5'- cCAGCGGCGGCGccGCG-GCGUCCG-CGg -3'
miRNA:   3'- aGUUGUCGCUGU--CGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 36382 0.74 0.401469
Target:  5'- --uGCAgGCGGcCGGCGGGCGCgCGGCGg -3'
miRNA:   3'- aguUGU-CGCU-GUCGCUCGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 71950 0.74 0.401469
Target:  5'- aCGcACuGCGACAgccGCGGGCGCCCGGUGg -3'
miRNA:   3'- aGU-UGuCGCUGU---CGCUCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 83702 0.74 0.384736
Target:  5'- aCAACGGCGAUGGC--GCGUCUGACGc -3'
miRNA:   3'- aGUUGUCGCUGUCGcuCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 108367 0.74 0.376544
Target:  5'- gCAGCGGCGcCGGCGccgcGCGgCCGGCGa -3'
miRNA:   3'- aGUUGUCGCuGUCGCu---CGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 76635 0.74 0.384736
Target:  5'- aUCAACAuCGACcacGCGAGCGCCUG-CGa -3'
miRNA:   3'- -AGUUGUcGCUGu--CGCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 103864 0.74 0.383911
Target:  5'- --cGCGGCGGCGGCGGGgcggcgcCGCCgGGCGg -3'
miRNA:   3'- aguUGUCGCUGUCGCUC-------GCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 3850 0.74 0.376544
Target:  5'- gCAGCGGCGcCGGCGccgcGCGgCCGGCGa -3'
miRNA:   3'- aGUUGUCGCuGUCGCu---CGCgGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 126097 0.74 0.393045
Target:  5'- gCGGCcgccGCGGCGGCGGGCGCCauccuGGCGc -3'
miRNA:   3'- aGUUGu---CGCUGUCGCUCGCGGg----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 28667 0.74 0.393045
Target:  5'- gUCGGCAGCGGCgAGgGGG-GCCgCGGCGg -3'
miRNA:   3'- -AGUUGUCGCUG-UCgCUCgCGG-GCUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.