Results 81 - 100 of 794 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23582 | 3' | -57.5 | NC_005261.1 | + | 60837 | 0.75 | 0.33738 |
Target: 5'- aUCAuCGGCGGCGGCGAggucgcGCGCCgGGCc -3' miRNA: 3'- -AGUuGUCGCUGUCGCU------CGCGGgCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 133813 | 0.75 | 0.340402 |
Target: 5'- cUCGACGGCGACGaggcgcugcgcggccGCGuGCGCgCCGugGc -3' miRNA: 3'- -AGUUGUCGCUGU---------------CGCuCGCG-GGCugC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 29807 | 0.75 | 0.344971 |
Target: 5'- gCGcCGGCGGC-GCGGGCGCCCG-CGc -3' miRNA: 3'- aGUuGUCGCUGuCGCUCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 108410 | 0.75 | 0.344971 |
Target: 5'- cUCGGCGagcGCGGC-GCGGGCGCCCG-CGc -3' miRNA: 3'- -AGUUGU---CGCUGuCGCUCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 98199 | 0.75 | 0.344971 |
Target: 5'- --cGCGGCgGGCAGCGGGCGCCgccacggcagcgCGGCGg -3' miRNA: 3'- aguUGUCG-CUGUCGCUCGCGG------------GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 3893 | 0.75 | 0.344971 |
Target: 5'- cUCGGCGagcGCGGC-GCGGGCGCCCG-CGc -3' miRNA: 3'- -AGUUGU---CGCUGuCGCUCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 134324 | 0.75 | 0.344971 |
Target: 5'- gCGcCGGCGGC-GCGGGCGCCCG-CGc -3' miRNA: 3'- aGUuGUCGCUGuCGCUCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 104846 | 0.75 | 0.352683 |
Target: 5'- gCGGCGGCGGCuGCGGcggcccGCaGCCCGGCGc -3' miRNA: 3'- aGUUGUCGCUGuCGCU------CG-CGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 88815 | 0.75 | 0.352683 |
Target: 5'- cCGGCGGCGggGCGGCGGcGCGCgCCGGCc -3' miRNA: 3'- aGUUGUCGC--UGUCGCU-CGCG-GGCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 138000 | 0.75 | 0.352683 |
Target: 5'- gCGGCGGCGGCuGCGGcggcccGCaGCCCGGCGc -3' miRNA: 3'- aGUUGUCGCUGuCGCU------CG-CGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 329 | 0.75 | 0.352683 |
Target: 5'- gCGGCGGCGGCuGCGGcggcccGCaGCCCGGCGc -3' miRNA: 3'- aGUUGUCGCUGuCGCU------CG-CGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 125893 | 0.75 | 0.352683 |
Target: 5'- gCGGCGGCGGCcgcgccggccaAGCGcGCGCCCGcCGg -3' miRNA: 3'- aGUUGUCGCUG-----------UCGCuCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 91238 | 0.75 | 0.360516 |
Target: 5'- gCGGCGGCG-CGGCGcGCGCugCCGGCGg -3' miRNA: 3'- aGUUGUCGCuGUCGCuCGCG--GGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 74882 | 0.75 | 0.36847 |
Target: 5'- gCGGCGGCGGCGGCGgagucGGCGgCCCG-CGc -3' miRNA: 3'- aGUUGUCGCUGUCGC-----UCGC-GGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 82679 | 0.75 | 0.36847 |
Target: 5'- aCGugGGCGugGGCGGG-GCCUGGCu -3' miRNA: 3'- aGUugUCGCugUCGCUCgCGGGCUGc -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 50688 | 0.75 | 0.36847 |
Target: 5'- aUAACAuccGCGcCAGCGAcGCGCUCGACGc -3' miRNA: 3'- aGUUGU---CGCuGUCGCU-CGCGGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 86270 | 0.75 | 0.36847 |
Target: 5'- cCAGCAGCGcgGCGGCGucgucgguGGCGCCggCGACGa -3' miRNA: 3'- aGUUGUCGC--UGUCGC--------UCGCGG--GCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 93899 | 0.75 | 0.36847 |
Target: 5'- gUCGcCAGCGACuGCGggcgcGGCGCCCG-CGg -3' miRNA: 3'- -AGUuGUCGCUGuCGC-----UCGCGGGCuGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 3850 | 0.74 | 0.376544 |
Target: 5'- gCAGCGGCGcCGGCGccgcGCGgCCGGCGa -3' miRNA: 3'- aGUUGUCGCuGUCGCu---CGCgGGCUGC- -5' |
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23582 | 3' | -57.5 | NC_005261.1 | + | 101046 | 0.74 | 0.376544 |
Target: 5'- cCAGCAGCGccgcCAGC-AGCGCCCaGGCGc -3' miRNA: 3'- aGUUGUCGCu---GUCGcUCGCGGG-CUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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