miRNA display CGI


Results 61 - 80 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 79060 0.66 0.846457
Target:  5'- -gAGCAGuCGGCgggcuggGGCGGGCGCCgCG-CGc -3'
miRNA:   3'- agUUGUC-GCUG-------UCGCUCGCGG-GCuGC- -5'
23582 3' -57.5 NC_005261.1 + 10939 0.66 0.842462
Target:  5'- cCAGcCGGCGgggagggcugcccccGCGGCGGGCggGCCCGcCGu -3'
miRNA:   3'- aGUU-GUCGC---------------UGUCGCUCG--CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 70401 0.66 0.839231
Target:  5'- -aGAguGCGGCccuccuGCGcGCGCCCGAg- -3'
miRNA:   3'- agUUguCGCUGu-----CGCuCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 43163 0.66 0.839231
Target:  5'- cCGACAucGCGGC-GCGAuacgGCGCCgcCGGCGa -3'
miRNA:   3'- aGUUGU--CGCUGuCGCU----CGCGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 68959 0.66 0.839231
Target:  5'- gUCGGCgcgGGCGGCucgccggggucGGCGcgggccAGCGCCuCGGCGa -3'
miRNA:   3'- -AGUUG---UCGCUG-----------UCGC------UCGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 125871 0.66 0.839231
Target:  5'- cUCGGCcGgGGCGGCGcccuuggcugaaGGCGCCUGAg- -3'
miRNA:   3'- -AGUUGuCgCUGUCGC------------UCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 94817 0.66 0.839231
Target:  5'- cCGGCGGCGGaGGCcgcccccGGCGCCUgGACGg -3'
miRNA:   3'- aGUUGUCGCUgUCGc------UCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 99791 0.66 0.839231
Target:  5'- cUCGGCaaaggcgugcaGGUGACGaaGGGCGCCCG-CGa -3'
miRNA:   3'- -AGUUG-----------UCGCUGUcgCUCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 6007 0.66 0.839231
Target:  5'- --cGCGGCGAgggcucCGGCGAGCGUCCc--- -3'
miRNA:   3'- aguUGUCGCU------GUCGCUCGCGGGcugc -5'
23582 3' -57.5 NC_005261.1 + 104885 0.66 0.839231
Target:  5'- gUCGAUcGCcGCcGCGuGCGCCCgGACGc -3'
miRNA:   3'- -AGUUGuCGcUGuCGCuCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 63088 0.66 0.839231
Target:  5'- --cGCGuCGcCAGgGGGCGCUCGGCGa -3'
miRNA:   3'- aguUGUcGCuGUCgCUCGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 17730 0.66 0.839231
Target:  5'- -gGGCAGCGGCGcCGGGUaGCCgGugGc -3'
miRNA:   3'- agUUGUCGCUGUcGCUCG-CGGgCugC- -5'
23582 3' -57.5 NC_005261.1 + 51352 0.66 0.839231
Target:  5'- cCAGgGcGCGGCcaaGGCcgccGCGCCCGGCGg -3'
miRNA:   3'- aGUUgU-CGCUG---UCGcu--CGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 134097 0.66 0.839231
Target:  5'- cUCGGC-GCGcCGGCGcGCGCUCGcCGc -3'
miRNA:   3'- -AGUUGuCGCuGUCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 106077 0.66 0.839231
Target:  5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3'
miRNA:   3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 110525 0.66 0.839231
Target:  5'- --cGCGGCGAgggcucCGGCGAGCGUCCc--- -3'
miRNA:   3'- aguUGUCGCU------GUCGCUCGCGGGcugc -5'
23582 3' -57.5 NC_005261.1 + 105702 0.66 0.839231
Target:  5'- aUCAcCAGCGcCAGCGAcGUcuGCCgCGGCu -3'
miRNA:   3'- -AGUuGUCGCuGUCGCU-CG--CGG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 15937 0.66 0.839231
Target:  5'- gUCGcCuGCGGCAGCGGGgcCGCgCUGAUGc -3'
miRNA:   3'- -AGUuGuCGCUGUCGCUC--GCG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78496 0.66 0.839231
Target:  5'- -gGAgGGCGGCcGCGcGCcgccgcugccGCCCGGCGg -3'
miRNA:   3'- agUUgUCGCUGuCGCuCG----------CGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 76284 0.66 0.839231
Target:  5'- -gGAC-GCGGuCGGCGcGCGCCCcguGGCGa -3'
miRNA:   3'- agUUGuCGCU-GUCGCuCGCGGG---CUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.