miRNA display CGI


Results 81 - 100 of 794 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 76209 0.66 0.839231
Target:  5'- gCAGCAGCcGCGccuGCGccgcGCGCuuGACGa -3'
miRNA:   3'- aGUUGUCGcUGU---CGCu---CGCGggCUGC- -5'
23582 3' -57.5 NC_005261.1 + 1560 0.66 0.839231
Target:  5'- aCAcCGGCcGCAGCG-GCGCgCCGAg- -3'
miRNA:   3'- aGUuGUCGcUGUCGCuCGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 129606 0.66 0.839231
Target:  5'- gCGGCAauuucGCGGCGGgguCGGGCGCCUuugcaGGCGg -3'
miRNA:   3'- aGUUGU-----CGCUGUC---GCUCGCGGG-----CUGC- -5'
23582 3' -57.5 NC_005261.1 + 100181 0.66 0.839231
Target:  5'- gCAACGccGUGGCGGCGGGgcaGCgUGGCGg -3'
miRNA:   3'- aGUUGU--CGCUGUCGCUCg--CGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 104885 0.66 0.839231
Target:  5'- gUCGAUcGCcGCcGCGuGCGCCCgGACGc -3'
miRNA:   3'- -AGUUGuCGcUGuCGCuCGCGGG-CUGC- -5'
23582 3' -57.5 NC_005261.1 + 43800 0.66 0.839231
Target:  5'- --cGCGG-GugAGgGGGCGCCgGGCGc -3'
miRNA:   3'- aguUGUCgCugUCgCUCGCGGgCUGC- -5'
23582 3' -57.5 NC_005261.1 + 49023 0.66 0.839231
Target:  5'- cUCu-CAGCGGCGGCGGGCacGCgCaGGCa -3'
miRNA:   3'- -AGuuGUCGCUGUCGCUCG--CGgG-CUGc -5'
23582 3' -57.5 NC_005261.1 + 125871 0.66 0.839231
Target:  5'- cUCGGCcGgGGCGGCGcccuuggcugaaGGCGCCUGAg- -3'
miRNA:   3'- -AGUUGuCgCUGUCGC------------UCGCGGGCUgc -5'
23582 3' -57.5 NC_005261.1 + 4834 0.66 0.838419
Target:  5'- --cGCAgGCGGCGGCGuccGCGCCgcagccucaagggCGGCGg -3'
miRNA:   3'- aguUGU-CGCUGUCGCu--CGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 638 0.66 0.838419
Target:  5'- -uGGCGGCGGCcGCcAGCGCcgcguccCCGGCGc -3'
miRNA:   3'- agUUGUCGCUGuCGcUCGCG-------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 105155 0.66 0.838419
Target:  5'- -uGGCGGCGGCcGCcAGCGCcgcguccCCGGCGc -3'
miRNA:   3'- agUUGUCGCUGuCGcUCGCG-------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 109351 0.66 0.838419
Target:  5'- --cGCAgGCGGCGGCGuccGCGCCgcagccucaagggCGGCGg -3'
miRNA:   3'- aguUGU-CGCUGUCGCu--CGCGG-------------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 78200 0.66 0.838419
Target:  5'- gUCGGCGccGaCGGCGGCGGGCucuucgugucccuGCCCGuCGc -3'
miRNA:   3'- -AGUUGU--C-GCUGUCGCUCG-------------CGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 123042 0.66 0.831027
Target:  5'- gCGAUGGCGGCGuuucccGCGGGCGCcgCCGcCGc -3'
miRNA:   3'- aGUUGUCGCUGU------CGCUCGCG--GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 127850 0.66 0.831027
Target:  5'- cCGACgAGCGcGCGGCGcAGCGCgCG-CGu -3'
miRNA:   3'- aGUUG-UCGC-UGUCGC-UCGCGgGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 73392 0.66 0.831027
Target:  5'- gUCAugGcGCuGCAGCGcGCGgaCCCGGCGc -3'
miRNA:   3'- -AGUugU-CGcUGUCGCuCGC--GGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 29299 0.66 0.831027
Target:  5'- gCGGCGuGCGugGGCGugcugGGC-CCCGACc -3'
miRNA:   3'- aGUUGU-CGCugUCGC-----UCGcGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 52248 0.66 0.831027
Target:  5'- gUCGGCGGCG-CAGCucGAGCGCgCaaucACGg -3'
miRNA:   3'- -AGUUGUCGCuGUCG--CUCGCGgGc---UGC- -5'
23582 3' -57.5 NC_005261.1 + 89400 0.66 0.831027
Target:  5'- -----cGCGGCGGCGGG-GCCgaCGACGg -3'
miRNA:   3'- aguuguCGCUGUCGCUCgCGG--GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 100035 0.66 0.831027
Target:  5'- gCAGCAGC-ACGccGCGGcGCGCCCaGGCc -3'
miRNA:   3'- aGUUGUCGcUGU--CGCU-CGCGGG-CUGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.