miRNA display CGI


Results 41 - 60 of 794 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 5266 0.67 0.78201
Target:  5'- --cGCGGCGACgaaggcggccacgucGGCGcAGCGCUCGGgGa -3'
miRNA:   3'- aguUGUCGCUG---------------UCGC-UCGCGGGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 5332 0.66 0.84725
Target:  5'- cUCGGCGcCGcCcGCG-GCGCCCGGCu -3'
miRNA:   3'- -AGUUGUcGCuGuCGCuCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 5398 0.68 0.730803
Target:  5'- -gGAgAGCGAgAGCGcgGGCGCCgCGAaCGa -3'
miRNA:   3'- agUUgUCGCUgUCGC--UCGCGG-GCU-GC- -5'
23582 3' -57.5 NC_005261.1 + 5439 0.68 0.71114
Target:  5'- gCGGCcGCGGCGGCGgcaacAGCGCCCcccCGa -3'
miRNA:   3'- aGUUGuCGCUGUCGC-----UCGCGGGcu-GC- -5'
23582 3' -57.5 NC_005261.1 + 5513 0.78 0.243923
Target:  5'- gCGGCAGCGGCGGCGAGgcCGCCggcuuCGGCGc -3'
miRNA:   3'- aGUUGUCGCUGUCGCUC--GCGG-----GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 5546 0.77 0.281069
Target:  5'- --cGCAGCGAgaCGGgGGGCGCCCGAgCGg -3'
miRNA:   3'- aguUGUCGCU--GUCgCUCGCGGGCU-GC- -5'
23582 3' -57.5 NC_005261.1 + 5644 0.7 0.630536
Target:  5'- -gGGCcgGGCGuCcGCGGGCGCgCCGACGu -3'
miRNA:   3'- agUUG--UCGCuGuCGCUCGCG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 5755 0.66 0.84725
Target:  5'- ---cCAG-GACGGCGAgGCGCugCCGGCGc -3'
miRNA:   3'- aguuGUCgCUGUCGCU-CGCG--GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 5817 0.76 0.308244
Target:  5'- cUCGGCAGCGGCGGcCGAuGCGCgCCGGg- -3'
miRNA:   3'- -AGUUGUCGCUGUC-GCU-CGCG-GGCUgc -5'
23582 3' -57.5 NC_005261.1 + 5857 0.75 0.33738
Target:  5'- -gAACAGCGccgcgagcGCGGCGAGCGCgCCGcgGCGg -3'
miRNA:   3'- agUUGUCGC--------UGUCGCUCGCG-GGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 6007 0.66 0.839231
Target:  5'- --cGCGGCGAgggcucCGGCGAGCGUCCc--- -3'
miRNA:   3'- aguUGUCGCU------GUCGCUCGCGGGcugc -5'
23582 3' -57.5 NC_005261.1 + 6078 0.7 0.610235
Target:  5'- --uGCAGCGGCGGC--GCGCUCGAgGa -3'
miRNA:   3'- aguUGUCGCUGUCGcuCGCGGGCUgC- -5'
23582 3' -57.5 NC_005261.1 + 6094 0.7 0.639677
Target:  5'- gCAACGGUGGCGGUGgaugaaaGGCGCacaCGGCa -3'
miRNA:   3'- aGUUGUCGCUGUCGC-------UCGCGg--GCUGc -5'
23582 3' -57.5 NC_005261.1 + 6140 0.68 0.71114
Target:  5'- gUCGGCGGCGACGGUGcuCGCCUu--- -3'
miRNA:   3'- -AGUUGUCGCUGUCGCucGCGGGcugc -5'
23582 3' -57.5 NC_005261.1 + 6157 0.76 0.301267
Target:  5'- gCAGCGGCGACGGCGGccGCGaCCuCGGCc -3'
miRNA:   3'- aGUUGUCGCUGUCGCU--CGC-GG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 6398 0.66 0.855078
Target:  5'- --cGCAGCa--GGCGGGCGCCgcgucaagCGGCGg -3'
miRNA:   3'- aguUGUCGcugUCGCUCGCGG--------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 6450 0.68 0.75013
Target:  5'- --cGCGGCGucggggccCAGCGGcGCGCCCGcCGc -3'
miRNA:   3'- aguUGUCGCu-------GUCGCU-CGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 6674 0.68 0.75013
Target:  5'- gCAGCcgGGCGACGGCGAcCGCCacguucugcuCGAUGu -3'
miRNA:   3'- aGUUG--UCGCUGUCGCUcGCGG----------GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 6756 0.7 0.619366
Target:  5'- gUCGACGGCGcGCucgcggaGGCGggaGGCGCCCG-CGa -3'
miRNA:   3'- -AGUUGUCGC-UG-------UCGC---UCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 6826 0.68 0.75013
Target:  5'- cCGGCAGCGGCGGgGGGC-UCgGugGc -3'
miRNA:   3'- aGUUGUCGCUGUCgCUCGcGGgCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.