miRNA display CGI

Results 61 - 80 of 794 are showing below:
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ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
23582	3'	-57.5	NC_005261.1	+	7016	0.7	0.610235
	Target:  5'- --cGCGGCcACGuacGCGGGCGCgCCGGCGg -3' miRNA:   3'- aguUGUCGcUGU---CGCUCGCG-GGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	7070	0.73	0.445262
	Target:  5'- gCGGCAGCagaaGGCGGCGAGCGCCgcaaaagaGACc -3' miRNA:   3'- aGUUGUCG----CUGUCGCUCGCGGg-------CUGc -5'
23582	3'	-57.5	NC_005261.1	+	7142	0.66	0.822644
	Target:  5'- --cGCGGCGACGGCGuacguggccaGGCaGuCCCGcACGg -3' miRNA:   3'- aguUGUCGCUGUCGC----------UCG-C-GGGC-UGC- -5'
23582	3'	-57.5	NC_005261.1	+	7489	0.66	0.857387
	Target:  5'- cCAGCAGCG-CGGCGAucaugucggcgugcaGCGCgaaggugacguccUCGGCGa -3' miRNA:   3'- aGUUGUCGCuGUCGCU---------------CGCG-------------GGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	7583	0.7	0.610235
	Target:  5'- -gAGCAGCGcguCGGCGAGCGCaCGcGCGc -3' miRNA:   3'- agUUGUCGCu--GUCGCUCGCGgGC-UGC- -5'
23582	3'	-57.5	NC_005261.1	+	7655	0.7	0.589998
	Target:  5'- -gGGCcgcGCGGCGGCGcuucCGCCCGGCGg -3' miRNA:   3'- agUUGu--CGCUGUCGCuc--GCGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	7690	0.68	0.75013
	Target:  5'- cCAGCAgauaaaacGCGACgAGCGGGCGCgcuUCGGCc -3' miRNA:   3'- aGUUGU--------CGCUG-UCGCUCGCG---GGCUGc -5'
23582	3'	-57.5	NC_005261.1	+	7877	0.68	0.740513
	Target:  5'- uUCAggGCAGCGAgcggcucuguucCGGCGcGGCGCCaccaGAUGg -3' miRNA:   3'- -AGU--UGUCGCU------------GUCGC-UCGCGGg---CUGC- -5'
23582	3'	-57.5	NC_005261.1	+	8450	0.67	0.778332
	Target:  5'- gCGAaGGCGAaGGcCGGGCcgaGCCCGGCGg -3' miRNA:   3'- aGUUgUCGCUgUC-GCUCG---CGGGCUGC- -5'
23582	3'	-57.5	NC_005261.1	+	8793	0.69	0.665025
	Target:  5'- cUCGGCGGCuGCAGcCGccgagggcuugaaggGGCGCCCGcCGg -3' miRNA:   3'- -AGUUGUCGcUGUC-GC---------------UCGCGGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	9372	0.76	0.329912
	Target:  5'- gUCGGCAGCGACgaGGCGGG-GCaCCGugGc -3' miRNA:   3'- -AGUUGUCGCUG--UCGCUCgCG-GGCugC- -5'
23582	3'	-57.5	NC_005261.1	+	9418	0.67	0.787487
	Target:  5'- gUCAgccGCAGCGcgagccccgccGCGGgccCGGGCGCCCaGACa -3' miRNA:   3'- -AGU---UGUCGC-----------UGUC---GCUCGCGGG-CUGc -5'
23582	3'	-57.5	NC_005261.1	+	9502	0.73	0.462591
	Target:  5'- cCGACAGCuACGGCGGGCgggcgggGCCCGgGCGc -3' miRNA:   3'- aGUUGUCGcUGUCGCUCG-------CGGGC-UGC- -5'
23582	3'	-57.5	NC_005261.1	+	10108	0.67	0.802729
	Target:  5'- cCGGCAGCGGCGGCGAcagccaccaccaccGCcgccaugaGCCaCGGCc -3' miRNA:   3'- aGUUGUCGCUGUCGCU--------------CG--------CGG-GCUGc -5'
23582	3'	-57.5	NC_005261.1	+	10412	0.67	0.778332
	Target:  5'- gCGGCcGCGAgcGCGAGCGgCCCGcCGc -3' miRNA:   3'- aGUUGuCGCUguCGCUCGC-GGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	10592	0.67	0.805374
	Target:  5'- aCGugAGCGGCAGCGAcuccagcaGCGaggaCGACu -3' miRNA:   3'- aGUugUCGCUGUCGCU--------CGCgg--GCUGc -5'
23582	3'	-57.5	NC_005261.1	+	10898	0.78	0.243923
	Target:  5'- cCAACGGCGGCGGCGgcAGCGCCgccgccggccgCGACa -3' miRNA:   3'- aGUUGUCGCUGUCGC--UCGCGG-----------GCUGc -5'
23582	3'	-57.5	NC_005261.1	+	10939	0.66	0.842462
	Target:  5'- cCAGcCGGCGgggagggcugcccccGCGGCGGGCggGCCCGcCGu -3' miRNA:   3'- aGUU-GUCGC---------------UGUCGCUCG--CGGGCuGC- -5'
23582	3'	-57.5	NC_005261.1	+	11675	0.69	0.680164
	Target:  5'- gCAGCAuuugcgcGCGACGGCG-GCGCgUGGCc -3' miRNA:   3'- aGUUGU-------CGCUGUCGCuCGCGgGCUGc -5'
23582	3'	-57.5	NC_005261.1	+	11711	0.72	0.520449
	Target:  5'- --cGCGGCGGgcGCGGGCGCCCaGGCa -3' miRNA:   3'- aguUGUCGCUguCGCUCGCGGG-CUGc -5'

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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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