miRNA display CGI


Results 81 - 100 of 794 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23582 3' -57.5 NC_005261.1 + 11747 0.71 0.583948
Target:  5'- gCAGCugguGGCGGCgcgguacuaccgcgaGGCGAGCGCgCUGGCGc -3'
miRNA:   3'- aGUUG----UCGCUG---------------UCGCUCGCG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 11824 0.68 0.740513
Target:  5'- -aGAgAGUGGgGGCGGGgGCCCcGCGg -3'
miRNA:   3'- agUUgUCGCUgUCGCUCgCGGGcUGC- -5'
23582 3' -57.5 NC_005261.1 + 11872 0.71 0.559885
Target:  5'- gUCAGCuGCGG-GGCGAGCccGCCCGcACGc -3'
miRNA:   3'- -AGUUGuCGCUgUCGCUCG--CGGGC-UGC- -5'
23582 3' -57.5 NC_005261.1 + 11926 0.76 0.322567
Target:  5'- cCGGCGGCuGCGGCGGcccGCGCCgCGGCGg -3'
miRNA:   3'- aGUUGUCGcUGUCGCU---CGCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 12064 0.72 0.510756
Target:  5'- cCGGCGguGCGGCAGCG-GCGUCCG-CGc -3'
miRNA:   3'- aGUUGU--CGCUGUCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 12771 0.67 0.769049
Target:  5'- gCGGCGGUGGCGGgGGGCuCgUCGGCGa -3'
miRNA:   3'- aGUUGUCGCUGUCgCUCGcG-GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 12961 0.72 0.482148
Target:  5'- --cGCGGCgcgcgcaccccaGACAGCGAGgGCCgCGACGc -3'
miRNA:   3'- aguUGUCG------------CUGUCGCUCgCGG-GCUGC- -5'
23582 3' -57.5 NC_005261.1 + 13017 0.78 0.243923
Target:  5'- aUCGACGGCGauaGCAGCGAcaGCGC-CGACGa -3'
miRNA:   3'- -AGUUGUCGC---UGUCGCU--CGCGgGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 13751 0.7 0.640693
Target:  5'- cUCGAuCGGCGGCAuguacGUGGGCGCCCcugagGGCa -3'
miRNA:   3'- -AGUU-GUCGCUGU-----CGCUCGCGGG-----CUGc -5'
23582 3' -57.5 NC_005261.1 + 14173 0.66 0.817532
Target:  5'- gUCGGCcgagcuguaccugcuGGCGcUAGCGcacucagaGGCGCCCGGCu -3'
miRNA:   3'- -AGUUG---------------UCGCuGUCGC--------UCGCGGGCUGc -5'
23582 3' -57.5 NC_005261.1 + 14348 0.73 0.463513
Target:  5'- gCAGCAGCGGCAGCagccGCGgCCGggGCGg -3'
miRNA:   3'- aGUUGUCGCUGUCGcu--CGCgGGC--UGC- -5'
23582 3' -57.5 NC_005261.1 + 14531 0.77 0.28768
Target:  5'- cCGGCGGUGGC-GCGGcCGCCCGGCGa -3'
miRNA:   3'- aGUUGUCGCUGuCGCUcGCGGGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 14695 0.66 0.84725
Target:  5'- aUggUGGCGAgGGgGGGCGCCuuCGGCc -3'
miRNA:   3'- aGuuGUCGCUgUCgCUCGCGG--GCUGc -5'
23582 3' -57.5 NC_005261.1 + 14737 0.72 0.501138
Target:  5'- aCGACGGUGGCAGgGGcgaucggcgccGCGCCgCGACa -3'
miRNA:   3'- aGUUGUCGCUGUCgCU-----------CGCGG-GCUGc -5'
23582 3' -57.5 NC_005261.1 + 14784 0.71 0.549938
Target:  5'- gCGACGGCGuCAugcGCGAGCugcggcugcgGCCCGugGc -3'
miRNA:   3'- aGUUGUCGCuGU---CGCUCG----------CGGGCugC- -5'
23582 3' -57.5 NC_005261.1 + 14846 0.67 0.787487
Target:  5'- aCGGCAGCaGGCGGCG-GCGCaUCG-CGc -3'
miRNA:   3'- aGUUGUCG-CUGUCGCuCGCG-GGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 15174 0.76 0.308244
Target:  5'- ---gUAGCGGCGGCG-GCGCCCG-CGg -3'
miRNA:   3'- aguuGUCGCUGUCGCuCGCGGGCuGC- -5'
23582 3' -57.5 NC_005261.1 + 15368 0.66 0.84725
Target:  5'- cCGGCGGCGcuCGGCGcccucGGCGCcgccgucgaugCCGACGc -3'
miRNA:   3'- aGUUGUCGCu-GUCGC-----UCGCG-----------GGCUGC- -5'
23582 3' -57.5 NC_005261.1 + 15414 0.67 0.769049
Target:  5'- --cGCAGCGcggguGCuGGCGGGCGCgCGGCu -3'
miRNA:   3'- aguUGUCGC-----UG-UCGCUCGCGgGCUGc -5'
23582 3' -57.5 NC_005261.1 + 15523 0.71 0.540046
Target:  5'- aUCGACGGCG-CGGCcGGCGgCgCGGCGa -3'
miRNA:   3'- -AGUUGUCGCuGUCGcUCGCgG-GCUGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.